A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.5
nTPM
Monaco:
101.3
nTPM
Schmiedel:
62.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.5
HPA sample
nTPM
NK-cell nTPM: 13.5
Samples: 6
Max nTPM: 33.4
Min nTPM: 5.8
P10809_1013
11.1
P10809_1033
12.8
P10809_1052
7.2
P10809_1071
5.8
P10809_1093
33.4
P10809_1103
10.6
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
101.3
Monaco sample
nTPM
NK-cell nTPM: 101.3
Samples: 4
Max nTPM: 123.0
Min nTPM: 67.0
RHH5316_R3683
67.0
RHH5224_R3596
116.1
RHH5253_R3625
99.1
RHH5282_R3654
123.0
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
62.9
Schmiedel sample id
TPM
NK-cell TPM: 62.9
Samples: 90
Max TPM: 88.9
Min TPM: 43.1
NK_1
88.9
NK_2
84.1
NK_3
83.7
NK_4
79.6
NK_5
77.1
NK_6
75.7
NK_7
75.7
NK_8
75.5
NK_9
74.7
NK_10
74.6
NK_11
74.5
NK_12
73.8
NK_13
73.5
NK_14
71.7
NK_15
71.5
NK_16
71.4
NK_17
71.0
NK_18
70.7
NK_19
69.8
NK_20
69.5
NK_21
68.5
NK_22
68.4
NK_23
68.3
NK_24
68.3
NK_25
68.2
NK_26
68.1
NK_27
68.0
NK_28
67.8
NK_29
67.5
NK_30
67.3
NK_31
67.2
NK_32
66.9
NK_33
66.7
NK_34
65.1
NK_35
65.1
NK_36
65.0
NK_37
64.7
NK_38
64.5
NK_39
64.3
NK_40
64.2
NK_41
63.5
NK_42
63.4
NK_43
63.3
NK_44
63.1
NK_45
62.9
NK_46
62.6
NK_47
62.4
NK_48
62.3
NK_49
62.2
NK_50
61.7
NK_51
61.2
NK_52
60.0
NK_53
60.0
NK_54
59.9
NK_55
59.7
NK_56
59.4
NK_57
59.3
NK_58
59.2
NK_59
58.6
NK_60
58.1
NK_61
57.5
NK_62
57.4
NK_63
56.9
NK_64
56.6
NK_65
56.5
NK_66
56.4
NK_67
56.3
NK_68
55.9
NK_69
55.6
NK_70
55.6
NK_71
55.5
NK_72
55.4
NK_73
55.0
NK_74
54.9
NK_75
54.4
NK_76
54.2
NK_77
54.2
NK_78
54.0
NK_79
53.9
NK_80
53.0
NK_81
52.3
NK_82
52.0
NK_83
51.8
NK_84
51.1
NK_85
50.7
NK_86
48.6
NK_87
47.8
NK_88
47.5
NK_89
47.1
NK_90
43.1
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