A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.1
nTPM
Monaco:
86.8
nTPM
Schmiedel:
41.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.1
HPA sample
nTPM
Classical monocyte nTPM: 7.3
Samples: 6
Max nTPM: 14.7
Min nTPM: 4.5
P10809_1003
5.4
P10809_1020
9.0
P10809_1039
14.7
P10809_1058
4.5
P10809_1080
5.3
P10809_1107
5.1
Intermediate monocyte nTPM: 8.1
Samples: 6
Max nTPM: 14.6
Min nTPM: 2.1
P10809_1004
14.6
P10809_1023
10.5
P10809_1042
8.0
P10809_1061
2.1
P10809_1081
4.9
P10809_1108
8.5
Non-classical monocyte nTPM: 3.8
Samples: 5
Max nTPM: 6.3
Min nTPM: 1.4
P10809_1005
2.1
P10809_1053
5.1
P10809_1072
1.4
P10809_1082
4.2
P10809_1109
6.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.8
Monaco sample
nTPM
Classical monocyte nTPM: 86.8
Samples: 4
Max nTPM: 97.8
Min nTPM: 73.2
RHH5313_R3680
73.2
RHH5221_R3593
97.8
RHH5250_R3622
89.1
RHH5279_R3651
86.9
Intermediate monocyte nTPM: 77.2
Samples: 4
Max nTPM: 94.4
Min nTPM: 51.2
RHH5314_R3681
81.6
RHH5222_R3594
81.8
RHH5251_R3623
94.4
RHH5280_R3652
51.2
Non-classical monocyte nTPM: 60.7
Samples: 4
Max nTPM: 70.6
Min nTPM: 43.2
RHH5315_R3682
64.9
RHH5223_R3595
43.2
RHH5252_R3624
64.2
RHH5281_R3653
70.6
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
41.7
Schmiedel sample id
TPM
Classical monocyte TPM: 41.7
Samples: 91
Max TPM: 60.4
Min TPM: 29.8
MONOCYTES_1
60.4
MONOCYTES_2
56.0
MONOCYTES_3
53.3
MONOCYTES_4
53.2
MONOCYTES_5
52.9
MONOCYTES_6
52.8
MONOCYTES_7
52.3
MONOCYTES_8
51.8
MONOCYTES_9
50.8
MONOCYTES_10
49.9
MONOCYTES_11
49.5
MONOCYTES_12
49.5
MONOCYTES_13
49.4
MONOCYTES_14
49.4
MONOCYTES_15
49.3
MONOCYTES_16
48.9
MONOCYTES_17
48.7
MONOCYTES_18
48.6
MONOCYTES_19
47.7
MONOCYTES_20
47.2
MONOCYTES_21
47.1
MONOCYTES_22
47.0
MONOCYTES_23
46.8
MONOCYTES_24
46.5
MONOCYTES_25
46.0
MONOCYTES_26
45.8
MONOCYTES_27
45.6
MONOCYTES_28
45.5
MONOCYTES_29
45.3
MONOCYTES_30
45.1
MONOCYTES_31
44.1
MONOCYTES_32
44.0
MONOCYTES_33
43.9
MONOCYTES_34
43.6
MONOCYTES_35
43.4
MONOCYTES_36
43.3
MONOCYTES_37
43.1
MONOCYTES_38
43.0
MONOCYTES_39
42.9
MONOCYTES_40
42.9
MONOCYTES_41
42.5
MONOCYTES_42
42.2
MONOCYTES_43
42.1
MONOCYTES_44
42.0
MONOCYTES_45
42.0
MONOCYTES_46
41.7
MONOCYTES_47
41.6
MONOCYTES_48
41.1
MONOCYTES_49
40.6
MONOCYTES_50
40.3
MONOCYTES_51
40.2
MONOCYTES_52
40.0
MONOCYTES_53
39.9
MONOCYTES_54
39.7
MONOCYTES_55
39.6
MONOCYTES_56
39.5
MONOCYTES_57
39.3
MONOCYTES_58
38.9
MONOCYTES_59
38.8
MONOCYTES_60
38.7
MONOCYTES_61
38.4
MONOCYTES_62
37.9
MONOCYTES_63
37.9
MONOCYTES_64
37.6
MONOCYTES_65
37.0
MONOCYTES_66
37.0
MONOCYTES_67
36.8
MONOCYTES_68
36.5
MONOCYTES_69
36.2
MONOCYTES_70
35.9
MONOCYTES_71
35.6
MONOCYTES_72
35.5
MONOCYTES_73
35.4
MONOCYTES_74
35.0
MONOCYTES_75
34.9
MONOCYTES_76
34.5
MONOCYTES_77
34.4
MONOCYTES_78
34.0
MONOCYTES_79
33.5
MONOCYTES_80
33.3
MONOCYTES_81
33.1
MONOCYTES_82
32.9
MONOCYTES_83
32.9
MONOCYTES_84
32.8
MONOCYTES_85
32.8
MONOCYTES_86
32.7
MONOCYTES_87
31.5
MONOCYTES_88
31.3
MONOCYTES_89
31.2
MONOCYTES_90
30.9
MONOCYTES_91
29.8
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Non-classical monocyte TPM: 40.5
Samples: 90
Max TPM: 57.1
Min TPM: 28.9
M2_1
57.1
M2_2
54.0
M2_3
53.1
M2_4
52.5
M2_5
50.3
M2_6
49.7
M2_7
49.1
M2_8
48.7
M2_9
48.7
M2_10
48.2
M2_11
47.9
M2_12
47.6
M2_13
47.2
M2_14
47.2
M2_15
47.1
M2_16
46.8
M2_17
46.7
M2_18
46.5
M2_19
46.2
M2_20
45.4
M2_21
45.1
M2_22
43.8
M2_23
43.7
M2_24
43.6
M2_25
43.6
M2_26
43.6
M2_27
43.5
M2_28
43.1
M2_29
43.0
M2_30
42.6
M2_31
42.4
M2_32
42.1
M2_33
41.9
M2_34
41.8
M2_35
41.7
M2_36
41.7
M2_37
41.6
M2_38
41.6
M2_39
41.3
M2_40
41.2
M2_41
40.9
M2_42
40.7
M2_43
40.5
M2_44
40.3
M2_45
40.1
M2_46
40.0
M2_47
39.9
M2_48
39.9
M2_49
39.9
M2_50
39.4
M2_51
39.0
M2_52
38.9
M2_53
38.6
M2_54
38.4
M2_55
38.4
M2_56
38.3
M2_57
38.2
M2_58
37.9
M2_59
37.7
M2_60
37.4
M2_61
37.3
M2_62
37.3
M2_63
37.2
M2_64
37.0
M2_65
36.9
M2_66
36.9
M2_67
36.9
M2_68
36.7
M2_69
36.6
M2_70
36.4
M2_71
36.2
M2_72
35.9
M2_73
35.3
M2_74
34.9
M2_75
34.6
M2_76
34.5
M2_77
34.3
M2_78
33.9
M2_79
33.8
M2_80
33.5
M2_81
33.0
M2_82
32.6
M2_83
32.0
M2_84
31.7
M2_85
31.2
M2_86
30.8
M2_87
30.2
M2_88
30.1
M2_89
30.0
M2_90
28.9
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