A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
33.4
nTPM
Monaco:
25.4
nTPM
Schmiedel:
27.7
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.4
HPA sample
nTPM
NK-cell nTPM: 33.4
Samples: 6
Max nTPM: 54.4
Min nTPM: 8.7
P10809_1013
20.8
P10809_1033
54.4
P10809_1052
33.9
P10809_1071
8.7
P10809_1093
50.6
P10809_1103
32.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.4
Monaco sample
nTPM
NK-cell nTPM: 25.4
Samples: 4
Max nTPM: 33.1
Min nTPM: 13.0
RHH5316_R3683
33.1
RHH5224_R3596
31.1
RHH5253_R3625
13.0
RHH5282_R3654
24.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.7
Schmiedel sample id
TPM
NK-cell TPM: 27.7
Samples: 90
Max TPM: 51.9
Min TPM: 7.1
NK_1
51.9
NK_2
49.5
NK_3
47.6
NK_4
46.7
NK_5
45.6
NK_6
45.3
NK_7
42.8
NK_8
42.2
NK_9
41.9
NK_10
41.9
NK_11
41.0
NK_12
40.0
NK_13
39.7
NK_14
39.3
NK_15
39.0
NK_16
38.8
NK_17
38.0
NK_18
37.5
NK_19
37.4
NK_20
37.4
NK_21
36.8
NK_22
36.7
NK_23
35.9
NK_24
35.9
NK_25
35.6
NK_26
35.4
NK_27
34.9
NK_28
34.7
NK_29
33.8
NK_30
33.5
NK_31
33.5
NK_32
33.1
NK_33
32.8
NK_34
32.4
NK_35
31.9
NK_36
30.9
NK_37
30.0
NK_38
30.0
NK_39
29.7
NK_40
29.6
NK_41
28.9
NK_42
28.9
NK_43
28.6
NK_44
28.2
NK_45
27.1
NK_46
26.8
NK_47
26.4
NK_48
26.2
NK_49
25.9
NK_50
25.7
NK_51
25.2
NK_52
25.0
NK_53
24.9
NK_54
24.4
NK_55
24.3
NK_56
24.1
NK_57
24.0
NK_58
23.7
NK_59
23.6
NK_60
22.6
NK_61
22.5
NK_62
22.0
NK_63
21.3
NK_64
21.1
NK_65
21.0
NK_66
20.9
NK_67
20.2
NK_68
20.1
NK_69
19.4
NK_70
18.2
NK_71
18.2
NK_72
18.0
NK_73
18.0
NK_74
17.7
NK_75
16.9
NK_76
16.0
NK_77
14.9
NK_78
14.8
NK_79
14.3
NK_80
13.7
NK_81
13.3
NK_82
12.3
NK_83
11.7
NK_84
11.1
NK_85
10.8
NK_86
9.9
NK_87
8.6
NK_88
8.5
NK_89
7.9
NK_90
7.1
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.