A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
32.7
nTPM
Monaco:
26.4
nTPM
Schmiedel:
20.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
HPA sample
nTPM
Classical monocyte nTPM: 29.4
Samples: 6
Max nTPM: 35.8
Min nTPM: 23.5
P10809_1003
23.5
P10809_1020
35.8
P10809_1039
34.7
P10809_1058
24.6
P10809_1080
26.5
P10809_1107
31.5
Intermediate monocyte nTPM: 32.7
Samples: 6
Max nTPM: 44.0
Min nTPM: 18.4
P10809_1004
18.4
P10809_1023
43.8
P10809_1042
33.5
P10809_1061
31.8
P10809_1081
24.6
P10809_1108
44.0
Non-classical monocyte nTPM: 24.7
Samples: 5
Max nTPM: 44.9
Min nTPM: 16.4
P10809_1005
22.9
P10809_1053
16.4
P10809_1072
44.9
P10809_1082
19.2
P10809_1109
20.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.4
Monaco sample
nTPM
Classical monocyte nTPM: 26.1
Samples: 4
Max nTPM: 37.6
Min nTPM: 18.1
RHH5313_R3680
18.1
RHH5221_R3593
22.2
RHH5250_R3622
26.4
RHH5279_R3651
37.6
Intermediate monocyte nTPM: 25.1
Samples: 4
Max nTPM: 34.6
Min nTPM: 17.6
RHH5314_R3681
27.8
RHH5222_R3594
17.6
RHH5251_R3623
20.3
RHH5280_R3652
34.6
Non-classical monocyte nTPM: 26.4
Samples: 4
Max nTPM: 40.5
Min nTPM: 18.1
RHH5315_R3682
19.0
RHH5223_R3595
28.0
RHH5252_R3624
18.1
RHH5281_R3653
40.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.8
Schmiedel sample id
TPM
Classical monocyte TPM: 20.7
Samples: 91
Max TPM: 30.6
Min TPM: 9.2
MONOCYTES_1
30.6
MONOCYTES_2
30.4
MONOCYTES_3
29.4
MONOCYTES_4
29.3
MONOCYTES_5
28.6
MONOCYTES_6
28.2
MONOCYTES_7
28.0
MONOCYTES_8
28.0
MONOCYTES_9
27.9
MONOCYTES_10
27.4
MONOCYTES_11
27.3
MONOCYTES_12
27.1
MONOCYTES_13
26.9
MONOCYTES_14
26.9
MONOCYTES_15
26.1
MONOCYTES_16
25.9
MONOCYTES_17
25.7
MONOCYTES_18
25.7
MONOCYTES_19
25.6
MONOCYTES_20
25.6
MONOCYTES_21
25.1
MONOCYTES_22
24.9
MONOCYTES_23
24.9
MONOCYTES_24
24.9
MONOCYTES_25
24.4
MONOCYTES_26
24.3
MONOCYTES_27
24.2
MONOCYTES_28
24.2
MONOCYTES_29
24.1
MONOCYTES_30
23.5
MONOCYTES_31
23.1
MONOCYTES_32
23.0
MONOCYTES_33
22.9
MONOCYTES_34
22.9
MONOCYTES_35
22.8
MONOCYTES_36
22.8
MONOCYTES_37
22.6
MONOCYTES_38
22.5
MONOCYTES_39
22.4
MONOCYTES_40
22.3
MONOCYTES_41
22.0
MONOCYTES_42
21.8
MONOCYTES_43
21.7
MONOCYTES_44
21.7
MONOCYTES_45
21.4
MONOCYTES_46
21.4
MONOCYTES_47
21.2
MONOCYTES_48
21.1
MONOCYTES_49
20.7
MONOCYTES_50
20.0
MONOCYTES_51
19.9
MONOCYTES_52
19.9
MONOCYTES_53
19.8
MONOCYTES_54
19.4
MONOCYTES_55
19.4
MONOCYTES_56
19.3
MONOCYTES_57
19.2
MONOCYTES_58
19.1
MONOCYTES_59
18.9
MONOCYTES_60
18.8
MONOCYTES_61
18.3
MONOCYTES_62
17.8
MONOCYTES_63
17.6
MONOCYTES_64
17.5
MONOCYTES_65
17.5
MONOCYTES_66
17.5
MONOCYTES_67
17.2
MONOCYTES_68
17.1
MONOCYTES_69
17.0
MONOCYTES_70
16.6
MONOCYTES_71
16.5
MONOCYTES_72
16.5
MONOCYTES_73
16.1
MONOCYTES_74
16.0
MONOCYTES_75
15.0
MONOCYTES_76
14.9
MONOCYTES_77
14.3
MONOCYTES_78
14.0
MONOCYTES_79
14.0
MONOCYTES_80
13.9
MONOCYTES_81
13.9
MONOCYTES_82
13.8
MONOCYTES_83
13.5
MONOCYTES_84
13.5
MONOCYTES_85
12.9
MONOCYTES_86
11.4
MONOCYTES_87
11.1
MONOCYTES_88
10.4
MONOCYTES_89
10.3
MONOCYTES_90
10.1
MONOCYTES_91
9.2
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Non-classical monocyte TPM: 20.8
Samples: 90
Max TPM: 36.7
Min TPM: 4.8
M2_1
36.7
M2_2
36.4
M2_3
35.6
M2_4
34.5
M2_5
32.7
M2_6
32.7
M2_7
32.1
M2_8
31.6
M2_9
30.9
M2_10
29.1
M2_11
29.1
M2_12
29.0
M2_13
28.5
M2_14
28.2
M2_15
27.9
M2_16
27.9
M2_17
27.8
M2_18
27.8
M2_19
27.7
M2_20
27.4
M2_21
27.4
M2_22
27.0
M2_23
26.8
M2_24
26.5
M2_25
26.4
M2_26
25.9
M2_27
25.5
M2_28
25.5
M2_29
25.4
M2_30
25.4
M2_31
25.4
M2_32
25.2
M2_33
24.5
M2_34
24.2
M2_35
23.4
M2_36
22.7
M2_37
22.6
M2_38
22.5
M2_39
22.5
M2_40
22.3
M2_41
21.8
M2_42
21.7
M2_43
21.7
M2_44
21.7
M2_45
21.6
M2_46
21.3
M2_47
21.1
M2_48
21.1
M2_49
20.9
M2_50
20.6
M2_51
20.5
M2_52
20.5
M2_53
19.8
M2_54
19.6
M2_55
19.2
M2_56
19.2
M2_57
18.0
M2_58
17.9
M2_59
17.7
M2_60
17.6
M2_61
17.2
M2_62
16.7
M2_63
16.3
M2_64
16.3
M2_65
16.1
M2_66
16.0
M2_67
15.3
M2_68
14.9
M2_69
14.8
M2_70
14.8
M2_71
14.5
M2_72
13.7
M2_73
13.2
M2_74
12.4
M2_75
11.9
M2_76
11.9
M2_77
11.2
M2_78
11.0
M2_79
10.9
M2_80
10.5
M2_81
9.9
M2_82
9.8
M2_83
9.2
M2_84
8.5
M2_85
8.1
M2_86
8.0
M2_87
7.8
M2_88
6.2
M2_89
5.1
M2_90
4.8
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