A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.8
nTPM
Monaco:
43.2
nTPM
Schmiedel:
45.2
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.8
HPA sample
nTPM
NK-cell nTPM: 2.8
Samples: 6
Max nTPM: 7.0
Min nTPM: 0.0
P10809_1013
2.5
P10809_1033
2.3
P10809_1052
5.0
P10809_1071
0.0
P10809_1093
0.0
P10809_1103
7.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.2
Monaco sample
nTPM
NK-cell nTPM: 43.2
Samples: 4
Max nTPM: 52.9
Min nTPM: 24.5
RHH5316_R3683
46.9
RHH5224_R3596
24.5
RHH5253_R3625
52.9
RHH5282_R3654
48.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
45.2
Schmiedel sample id
TPM
NK-cell TPM: 45.2
Samples: 90
Max TPM: 90.8
Min TPM: 17.6
NK_1
90.8
NK_2
88.5
NK_3
79.6
NK_4
75.3
NK_5
75.1
NK_6
72.3
NK_7
69.2
NK_8
66.0
NK_9
64.2
NK_10
63.7
NK_11
63.0
NK_12
62.9
NK_13
61.2
NK_14
60.5
NK_15
59.7
NK_16
58.2
NK_17
56.4
NK_18
56.2
NK_19
55.6
NK_20
55.5
NK_21
55.1
NK_22
55.1
NK_23
54.8
NK_24
54.0
NK_25
53.6
NK_26
53.2
NK_27
51.9
NK_28
51.7
NK_29
51.3
NK_30
49.7
NK_31
49.5
NK_32
48.8
NK_33
48.6
NK_34
48.5
NK_35
47.5
NK_36
46.6
NK_37
46.6
NK_38
46.5
NK_39
46.4
NK_40
46.3
NK_41
46.3
NK_42
46.3
NK_43
46.1
NK_44
46.0
NK_45
45.7
NK_46
44.8
NK_47
44.6
NK_48
44.3
NK_49
43.2
NK_50
43.0
NK_51
42.9
NK_52
42.8
NK_53
42.1
NK_54
41.2
NK_55
41.1
NK_56
40.8
NK_57
40.8
NK_58
40.0
NK_59
39.1
NK_60
37.4
NK_61
36.7
NK_62
36.7
NK_63
36.4
NK_64
36.2
NK_65
35.8
NK_66
35.2
NK_67
34.7
NK_68
34.1
NK_69
33.3
NK_70
32.9
NK_71
32.8
NK_72
32.5
NK_73
32.1
NK_74
31.1
NK_75
29.6
NK_76
28.9
NK_77
26.8
NK_78
26.4
NK_79
26.4
NK_80
25.9
NK_81
25.6
NK_82
25.6
NK_83
25.2
NK_84
24.9
NK_85
22.5
NK_86
21.7
NK_87
20.9
NK_88
19.4
NK_89
17.7
NK_90
17.6
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