A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.7
nTPM
Monaco:
120.0
nTPM
Schmiedel:
142.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.7
HPA sample
nTPM
Classical monocyte nTPM: 1.0
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.4
P10809_1003
1.4
P10809_1020
0.4
P10809_1039
0.6
P10809_1058
0.9
P10809_1080
1.1
P10809_1107
1.5
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 3.1
Min nTPM: 0.0
P10809_1004
2.2
P10809_1023
0.0
P10809_1042
3.1
P10809_1061
0.0
P10809_1081
0.5
P10809_1108
1.1
Non-classical monocyte nTPM: 1.7
Samples: 5
Max nTPM: 2.2
Min nTPM: 1.2
P10809_1005
2.0
P10809_1053
1.5
P10809_1072
1.2
P10809_1082
2.2
P10809_1109
1.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
120.0
Monaco sample
nTPM
Classical monocyte nTPM: 44.2
Samples: 4
Max nTPM: 49.5
Min nTPM: 39.6
RHH5313_R3680
44.8
RHH5221_R3593
39.6
RHH5250_R3622
43.0
RHH5279_R3651
49.5
Intermediate monocyte nTPM: 91.0
Samples: 4
Max nTPM: 141.6
Min nTPM: 40.3
RHH5314_R3681
90.2
RHH5222_R3594
40.3
RHH5251_R3623
141.6
RHH5280_R3652
91.8
Non-classical monocyte nTPM: 120.0
Samples: 4
Max nTPM: 137.2
Min nTPM: 98.1
RHH5315_R3682
111.3
RHH5223_R3595
98.1
RHH5252_R3624
133.4
RHH5281_R3653
137.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
142.6
Schmiedel sample id
TPM
Classical monocyte TPM: 49.6
Samples: 91
Max TPM: 80.8
Min TPM: 25.5
MONOCYTES_1
80.8
MONOCYTES_2
78.2
MONOCYTES_3
77.1
MONOCYTES_4
75.9
MONOCYTES_5
75.5
MONOCYTES_6
74.5
MONOCYTES_7
73.8
MONOCYTES_8
73.7
MONOCYTES_9
73.1
MONOCYTES_10
73.1
MONOCYTES_11
73.0
MONOCYTES_12
69.1
MONOCYTES_13
68.9
MONOCYTES_14
67.4
MONOCYTES_15
65.1
MONOCYTES_16
64.8
MONOCYTES_17
64.2
MONOCYTES_18
63.6
MONOCYTES_19
63.2
MONOCYTES_20
60.5
MONOCYTES_21
57.3
MONOCYTES_22
56.6
MONOCYTES_23
55.9
MONOCYTES_24
55.7
MONOCYTES_25
55.5
MONOCYTES_26
55.1
MONOCYTES_27
55.1
MONOCYTES_28
54.6
MONOCYTES_29
54.5
MONOCYTES_30
53.6
MONOCYTES_31
53.5
MONOCYTES_32
52.8
MONOCYTES_33
51.5
MONOCYTES_34
51.3
MONOCYTES_35
50.9
MONOCYTES_36
50.8
MONOCYTES_37
49.7
MONOCYTES_38
49.7
MONOCYTES_39
49.0
MONOCYTES_40
49.0
MONOCYTES_41
48.7
MONOCYTES_42
48.4
MONOCYTES_43
48.3
MONOCYTES_44
48.0
MONOCYTES_45
47.3
MONOCYTES_46
46.7
MONOCYTES_47
46.4
MONOCYTES_48
45.2
MONOCYTES_49
44.2
MONOCYTES_50
43.8
MONOCYTES_51
43.6
MONOCYTES_52
43.6
MONOCYTES_53
43.5
MONOCYTES_54
43.3
MONOCYTES_55
43.1
MONOCYTES_56
42.6
MONOCYTES_57
42.3
MONOCYTES_58
41.8
MONOCYTES_59
41.7
MONOCYTES_60
41.4
MONOCYTES_61
41.3
MONOCYTES_62
41.1
MONOCYTES_63
41.0
MONOCYTES_64
40.8
MONOCYTES_65
40.0
MONOCYTES_66
39.6
MONOCYTES_67
39.6
MONOCYTES_68
39.4
MONOCYTES_69
39.3
MONOCYTES_70
39.1
MONOCYTES_71
39.1
MONOCYTES_72
38.5
MONOCYTES_73
38.4
MONOCYTES_74
38.3
MONOCYTES_75
38.1
MONOCYTES_76
37.6
MONOCYTES_77
37.5
MONOCYTES_78
37.2
MONOCYTES_79
36.7
MONOCYTES_80
36.6
MONOCYTES_81
36.4
MONOCYTES_82
35.9
MONOCYTES_83
35.7
MONOCYTES_84
35.7
MONOCYTES_85
35.5
MONOCYTES_86
34.3
MONOCYTES_87
33.2
MONOCYTES_88
30.8
MONOCYTES_89
30.7
MONOCYTES_90
27.9
MONOCYTES_91
25.5
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Non-classical monocyte TPM: 142.6
Samples: 90
Max TPM: 238.1
Min TPM: 65.6
M2_1
238.1
M2_2
236.0
M2_3
232.2
M2_4
213.4
M2_5
210.9
M2_6
204.6
M2_7
201.1
M2_8
200.0
M2_9
197.4
M2_10
191.2
M2_11
190.4
M2_12
188.5
M2_13
187.6
M2_14
184.7
M2_15
183.9
M2_16
183.0
M2_17
182.7
M2_18
175.3
M2_19
175.0
M2_20
174.0
M2_21
173.6
M2_22
173.2
M2_23
172.5
M2_24
169.9
M2_25
168.3
M2_26
167.9
M2_27
165.5
M2_28
164.6
M2_29
162.9
M2_30
162.4
M2_31
159.1
M2_32
158.8
M2_33
158.6
M2_34
155.8
M2_35
153.8
M2_36
152.3
M2_37
148.5
M2_38
148.2
M2_39
148.0
M2_40
147.3
M2_41
146.4
M2_42
142.9
M2_43
141.9
M2_44
140.5
M2_45
140.2
M2_46
139.4
M2_47
135.2
M2_48
135.0
M2_49
133.6
M2_50
131.4
M2_51
129.8
M2_52
129.8
M2_53
128.8
M2_54
128.7
M2_55
126.8
M2_56
126.3
M2_57
124.6
M2_58
120.2
M2_59
119.3
M2_60
119.2
M2_61
119.0
M2_62
118.7
M2_63
118.5
M2_64
117.7
M2_65
117.5
M2_66
117.3
M2_67
116.7
M2_68
115.9
M2_69
113.7
M2_70
113.7
M2_71
110.8
M2_72
110.8
M2_73
109.7
M2_74
108.5
M2_75
108.1
M2_76
104.6
M2_77
102.1
M2_78
102.0
M2_79
101.2
M2_80
95.4
M2_81
91.2
M2_82
88.0
M2_83
86.1
M2_84
84.6
M2_85
82.8
M2_86
82.7
M2_87
81.4
M2_88
80.5
M2_89
65.8
M2_90
65.6
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