A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
81.6
nTPM
Monaco:
145.0
nTPM
Schmiedel:
28.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.6
HPA sample
nTPM
NK-cell nTPM: 81.6
Samples: 6
Max nTPM: 133.9
Min nTPM: 46.2
P10809_1013
69.5
P10809_1033
101.7
P10809_1052
87.6
P10809_1071
50.8
P10809_1093
46.2
P10809_1103
133.9
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
145.0
Monaco sample
nTPM
NK-cell nTPM: 145.0
Samples: 4
Max nTPM: 180.3
Min nTPM: 121.9
RHH5316_R3683
121.9
RHH5224_R3596
180.3
RHH5253_R3625
154.5
RHH5282_R3654
123.3
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.0
Schmiedel sample id
TPM
NK-cell TPM: 28.0
Samples: 90
Max TPM: 41.7
Min TPM: 12.9
NK_1
41.7
NK_2
39.5
NK_3
37.5
NK_4
36.5
NK_5
35.5
NK_6
35.4
NK_7
35.1
NK_8
34.9
NK_9
34.5
NK_10
34.3
NK_11
34.3
NK_12
34.0
NK_13
34.0
NK_14
33.9
NK_15
33.9
NK_16
33.8
NK_17
33.7
NK_18
33.7
NK_19
33.1
NK_20
33.0
NK_21
32.8
NK_22
32.6
NK_23
32.3
NK_24
31.9
NK_25
31.9
NK_26
31.7
NK_27
31.7
NK_28
31.4
NK_29
31.3
NK_30
31.0
NK_31
30.9
NK_32
30.8
NK_33
30.7
NK_34
30.7
NK_35
30.2
NK_36
30.1
NK_37
30.1
NK_38
29.7
NK_39
29.6
NK_40
29.3
NK_41
29.3
NK_42
29.1
NK_43
29.0
NK_44
28.8
NK_45
28.3
NK_46
28.3
NK_47
28.2
NK_48
28.1
NK_49
27.8
NK_50
27.8
NK_51
27.7
NK_52
27.7
NK_53
27.1
NK_54
27.1
NK_55
27.1
NK_56
26.6
NK_57
26.5
NK_58
26.0
NK_59
25.8
NK_60
25.8
NK_61
25.7
NK_62
25.6
NK_63
25.5
NK_64
25.4
NK_65
24.8
NK_66
24.3
NK_67
24.2
NK_68
24.0
NK_69
23.9
NK_70
23.9
NK_71
23.8
NK_72
23.6
NK_73
23.1
NK_74
22.8
NK_75
22.5
NK_76
22.5
NK_77
22.2
NK_78
21.7
NK_79
21.5
NK_80
21.0
NK_81
19.0
NK_82
18.9
NK_83
18.7
NK_84
18.5
NK_85
18.5
NK_86
18.2
NK_87
17.6
NK_88
17.1
NK_89
16.3
NK_90
12.9
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