A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
306.0
nTPM
Monaco:
899.3
nTPM
Schmiedel:
112.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
306.0
HPA sample
nTPM
Classical monocyte nTPM: 306.0
Samples: 6
Max nTPM: 555.8
Min nTPM: 198.5
P10809_1003
555.8
P10809_1020
291.7
P10809_1039
266.3
P10809_1058
198.5
P10809_1080
271.1
P10809_1107
252.7
Intermediate monocyte nTPM: 168.8
Samples: 6
Max nTPM: 195.8
Min nTPM: 142.2
P10809_1004
165.0
P10809_1023
195.8
P10809_1042
190.1
P10809_1061
167.3
P10809_1081
142.2
P10809_1108
152.1
Non-classical monocyte nTPM: 120.8
Samples: 5
Max nTPM: 180.4
Min nTPM: 72.8
P10809_1005
127.3
P10809_1053
110.4
P10809_1072
180.4
P10809_1082
72.8
P10809_1109
113.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
899.3
Monaco sample
nTPM
Classical monocyte nTPM: 899.3
Samples: 4
Max nTPM: 971.7
Min nTPM: 800.5
RHH5313_R3680
966.1
RHH5221_R3593
971.7
RHH5250_R3622
858.9
RHH5279_R3651
800.5
Intermediate monocyte nTPM: 439.3
Samples: 4
Max nTPM: 460.2
Min nTPM: 405.3
RHH5314_R3681
457.7
RHH5222_R3594
405.3
RHH5251_R3623
433.9
RHH5280_R3652
460.2
Non-classical monocyte nTPM: 270.2
Samples: 4
Max nTPM: 291.8
Min nTPM: 241.4
RHH5315_R3682
291.8
RHH5223_R3595
241.4
RHH5252_R3624
267.1
RHH5281_R3653
280.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
112.0
Schmiedel sample id
TPM
Classical monocyte TPM: 112.0
Samples: 91
Max TPM: 150.7
Min TPM: 71.6
MONOCYTES_1
150.7
MONOCYTES_2
150.2
MONOCYTES_3
147.5
MONOCYTES_4
146.3
MONOCYTES_5
145.1
MONOCYTES_6
140.3
MONOCYTES_7
139.5
MONOCYTES_8
137.7
MONOCYTES_9
136.8
MONOCYTES_10
134.3
MONOCYTES_11
134.1
MONOCYTES_12
133.6
MONOCYTES_13
133.4
MONOCYTES_14
129.9
MONOCYTES_15
129.5
MONOCYTES_16
129.2
MONOCYTES_17
128.2
MONOCYTES_18
128.2
MONOCYTES_19
128.0
MONOCYTES_20
127.8
MONOCYTES_21
126.9
MONOCYTES_22
126.7
MONOCYTES_23
126.2
MONOCYTES_24
125.1
MONOCYTES_25
125.0
MONOCYTES_26
123.6
MONOCYTES_27
123.3
MONOCYTES_28
123.1
MONOCYTES_29
122.3
MONOCYTES_30
122.1
MONOCYTES_31
121.1
MONOCYTES_32
120.5
MONOCYTES_33
120.0
MONOCYTES_34
119.3
MONOCYTES_35
119.2
MONOCYTES_36
118.7
MONOCYTES_37
117.1
MONOCYTES_38
115.5
MONOCYTES_39
114.8
MONOCYTES_40
114.5
MONOCYTES_41
113.5
MONOCYTES_42
112.9
MONOCYTES_43
111.3
MONOCYTES_44
110.7
MONOCYTES_45
110.5
MONOCYTES_46
109.7
MONOCYTES_47
109.0
MONOCYTES_48
108.5
MONOCYTES_49
108.2
MONOCYTES_50
108.1
MONOCYTES_51
107.1
MONOCYTES_52
107.0
MONOCYTES_53
106.4
MONOCYTES_54
106.0
MONOCYTES_55
106.0
MONOCYTES_56
105.7
MONOCYTES_57
105.7
MONOCYTES_58
105.3
MONOCYTES_59
104.1
MONOCYTES_60
103.7
MONOCYTES_61
103.4
MONOCYTES_62
103.4
MONOCYTES_63
102.5
MONOCYTES_64
102.2
MONOCYTES_65
101.9
MONOCYTES_66
101.7
MONOCYTES_67
101.5
MONOCYTES_68
98.8
MONOCYTES_69
98.5
MONOCYTES_70
98.0
MONOCYTES_71
97.2
MONOCYTES_72
96.2
MONOCYTES_73
95.0
MONOCYTES_74
94.6
MONOCYTES_75
93.3
MONOCYTES_76
93.0
MONOCYTES_77
93.0
MONOCYTES_78
93.0
MONOCYTES_79
91.5
MONOCYTES_80
90.8
MONOCYTES_81
90.6
MONOCYTES_82
90.4
MONOCYTES_83
89.9
MONOCYTES_84
88.8
MONOCYTES_85
88.5
MONOCYTES_86
88.2
MONOCYTES_87
85.9
MONOCYTES_88
82.7
MONOCYTES_89
81.9
MONOCYTES_90
72.9
MONOCYTES_91
71.6
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Non-classical monocyte TPM: 40.5
Samples: 90
Max TPM: 64.3
Min TPM: 21.0
M2_1
64.3
M2_2
62.5
M2_3
61.6
M2_4
61.6
M2_5
57.9
M2_6
57.6
M2_7
56.7
M2_8
55.9
M2_9
55.3
M2_10
55.1
M2_11
53.7
M2_12
53.7
M2_13
52.5
M2_14
52.2
M2_15
52.0
M2_16
51.5
M2_17
51.5
M2_18
50.7
M2_19
50.5
M2_20
50.3
M2_21
50.0
M2_22
49.6
M2_23
48.1
M2_24
48.1
M2_25
47.5
M2_26
45.7
M2_27
45.3
M2_28
44.7
M2_29
44.1
M2_30
44.1
M2_31
44.1
M2_32
43.9
M2_33
43.4
M2_34
42.8
M2_35
42.7
M2_36
41.3
M2_37
41.2
M2_38
41.2
M2_39
40.5
M2_40
40.5
M2_41
40.1
M2_42
40.0
M2_43
39.6
M2_44
39.4
M2_45
38.8
M2_46
38.6
M2_47
38.2
M2_48
38.1
M2_49
38.1
M2_50
37.7
M2_51
37.7
M2_52
37.0
M2_53
36.7
M2_54
36.5
M2_55
36.2
M2_56
36.1
M2_57
36.1
M2_58
35.8
M2_59
35.8
M2_60
35.6
M2_61
35.4
M2_62
35.3
M2_63
35.2
M2_64
35.2
M2_65
35.2
M2_66
34.6
M2_67
34.5
M2_68
33.8
M2_69
33.4
M2_70
33.0
M2_71
32.8
M2_72
32.6
M2_73
32.2
M2_74
32.1
M2_75
31.6
M2_76
30.6
M2_77
30.5
M2_78
30.4
M2_79
29.0
M2_80
28.6
M2_81
27.6
M2_82
27.3
M2_83
27.1
M2_84
25.5
M2_85
24.8
M2_86
23.5
M2_87
23.2
M2_88
21.3
M2_89
21.2
M2_90
21.0
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