MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.9 nTPM
HPA Brain:8.4 nTPM
GTEx:6.9 nTPM
FANTOM5:13.9 Scaled Tags Per Million
Pig:29.4 nTPM
Mouse:3.6 nTPM
Allen mouse:0.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 8.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 6.0
1833 Male, age 53, unknown 7.7
1830 Male, age 51, unknown 7.2
1870 Female, age 42, unknown 7.0
2019 Male, age 18, unknown 6.6
2411 Female, age 72, unknown 6.2
2828 Female, age 72, unknown 6.1
2666 Male, age 74, left hemisphere 5.6
1827 Male, age 72, unknown 5.5
2586 Male, age 75, left hemisphere 4.8
2219 Male, age 76, both hemispheres 3.4
Dorsal raphe nucleus
nTPM: 6.3
2750 Male, age 76, both hemispheres 9.3
2016 Female, age 72, unknown 6.7
1828 Male, age 53, unknown 5.4
2047 Male, age 72, unknown 5.3
2298 Female, age 72, unknown 5.1
Inferior colliculus
nTPM: 4.0
1848 Female, age 42, unknown 4.8
1890 Male, age 53, unknown 4.3
2849 Male, age 72, unknown 4.1
2097 Female, age 72, unknown 2.9
Median raphe nucleus
nTPM: 4.4
2220 Male, age 76, midline 4.4
Periaquaductal grey, anterior
nTPM: 5.0
2502 Female, age 75, unknown 5.9
1947 Male, age 18, unknown 5.4
1795 Male, age 51, unknown 3.6
Periaquaductal grey, dorsal
nTPM: 3.6
1831 Male, age 72, unknown 6.2
2464 Female, age 72, unknown 3.8
1840 Male, age 53, unknown 2.4
2850 Male, age 76, both hemispheres 2.1
Periaquaductal grey, lateral
nTPM: 2.8
2053 Male, age 18, unknown 3.6
2272 Male, age 74, both hemispheres 3.2
2140 Male, age 76, both hemispheres 1.6
Pretectal area
nTPM: 4.4
1815 Male, age 53, unknown 5.3
1817 Female, age 42, unknown 5.3
2825 Male, age 18, unknown 5.1
1944 Female, age 72, unknown 5.0
2007 Male, age 72, unknown 4.8
2407 Male, age 75, both hemispheres 4.1
2667 Female, age 75, unknown 4.1
2224 Female, age 72, unknown 3.9
2316 Male, age 76, right hemisphere 3.9
1816 Male, age 51, unknown 3.8
2273 Male, age 74, both hemispheres 3.4
Red nucleus
nTPM: 8.4
2588 Male, age 74, left hemisphere 12.0
2823 Male, age 76, right hemisphere 10.0
2584 Male, age 75, left hemisphere 9.5
1821 Female, age 72, unknown 9.4
1865 Male, age 51, unknown 9.0
2227 Male, age 72, unknown 9.0
1904 Male, age 53, unknown 8.3
2725 Female, age 75, unknown 7.3
2785 Male, age 18, unknown 7.2
1954 Female, age 42, unknown 6.9
2769 Male, age 72, unknown 6.1
2503 Female, age 72, unknown 5.7
Substantia nigra
nTPM: 4.9
2665 Male, age 74, both hemispheres 6.9
1851 Male, age 51, unknown 6.5
2409 Female, age 72, unknown 6.4
1889 Female, age 72, unknown 5.0
1941 Male, age 53, unknown 4.7
1916 Female, age 42, unknown 4.4
2590 Female, age 75, unknown 4.2
2699 Male, age 18, unknown 3.8
2241 Male, age 72, unknown 3.5
2583 Male, age 75, right hemisphere 3.5
Superior colliculus
nTPM: 6.3
1913 Female, age 42, unknown 10.5
2587 Male, age 74, left hemisphere 7.8
2668 Female, age 75, unknown 6.8
2087 Female, age 72, unknown 6.7
1895 Male, age 76, right hemisphere 6.5
1995 Male, age 72, unknown 6.3
1796 Male, age 53, unknown 6.0
1839 Male, age 51, unknown 4.7
2261 Male, age 18, unknown 4.6
2664 Male, age 75, both hemispheres 3.2
Ventral tegmental area
nTPM: 6.0
2223 Female, age 72, unknown 8.0
1942 Male, age 51, unknown 6.4
1915 Female, age 42, unknown 6.2
2021 Male, age 53, unknown 5.5
2410 Female, age 72, unknown 5.3
2218 Male, age 76, both hemispheres 4.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.9
Samples: 183

Max nTPM: 31.0
Min nTPM: 0.8
Std nTPM: 4.6
Median nTPM: 5.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 31.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 30.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 28.0
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 21.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 21.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 20.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 16.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 15.6
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 14.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 14.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.9
FF:10158-103A5 76 years, female 13.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 29.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.4
Samples: 4

Max nTPM: 28.2
Min nTPM: 9.2
Sample A Female 13.1
Sample B Female 28.2
Sample C Male 9.2
Sample D Male 11.0
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 13.7
Min nTPM: 6.6
Sample A Female 13.7
Sample B Female 12.6
Sample C Male 8.3
Sample D Male 6.6
Periaqueductal gray
nTPM: 8.9
Samples: 3

Max nTPM: 10.6
Min nTPM: 8.0
Sample B Female 10.6
Sample C Male 8.0
Sample D Male 8.0
Superior colliculi
nTPM: 29.4
Samples: 4

Max nTPM: 75.7
Min nTPM: 8.8
Sample A Female 22.1
Sample B Female 75.7
Sample C Male 8.8
Sample D Male 11.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 4.5
Min nTPM: 3.0
Sample A Male 4.5
Sample B Male 3.3
Sample C Female 3.0
Sample D Female 3.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
76081897 Antisense, RP_060608_04_D01, Mouse strain C57BL/6J (56 days, male) 0.5

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