A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.1
nTPM
Monaco:
24.2
nTPM
Schmiedel:
42.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.1
HPA sample
nTPM
NK-cell nTPM: 1.0
Samples: 6
Max nTPM: 2.8
Min nTPM: 0.0
P10809_1013
2.8
P10809_1033
0.8
P10809_1052
0.7
P10809_1071
0.6
P10809_1093
0.0
P10809_1103
1.4
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
24.2
Monaco sample
nTPM
NK-cell nTPM: 24.3
Samples: 4
Max nTPM: 36.4
Min nTPM: 19.2
RHH5316_R3683
21.3
RHH5224_R3596
36.4
RHH5253_R3625
20.1
RHH5282_R3654
19.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.4
Schmiedel sample id
TPM
NK-cell TPM: 42.4
Samples: 90
Max TPM: 86.6
Min TPM: 10.7
NK_1
86.6
NK_2
81.8
NK_3
79.4
NK_4
77.9
NK_5
74.5
NK_6
74.3
NK_7
71.0
NK_8
69.3
NK_9
67.9
NK_10
67.9
NK_11
67.5
NK_12
67.0
NK_13
66.3
NK_14
64.0
NK_15
62.6
NK_16
61.8
NK_17
61.7
NK_18
61.5
NK_19
61.2
NK_20
57.9
NK_21
56.5
NK_22
55.7
NK_23
55.5
NK_24
54.9
NK_25
54.9
NK_26
53.9
NK_27
52.5
NK_28
52.4
NK_29
52.3
NK_30
51.9
NK_31
51.0
NK_32
49.1
NK_33
48.8
NK_34
48.2
NK_35
48.0
NK_36
47.3
NK_37
47.3
NK_38
46.7
NK_39
46.6
NK_40
46.5
NK_41
46.3
NK_42
42.8
NK_43
41.4
NK_44
40.4
NK_45
40.3
NK_46
39.2
NK_47
38.6
NK_48
37.7
NK_49
36.6
NK_50
36.5
NK_51
35.6
NK_52
35.0
NK_53
34.8
NK_54
34.6
NK_55
34.5
NK_56
34.2
NK_57
33.7
NK_58
33.2
NK_59
33.1
NK_60
33.0
NK_61
32.8
NK_62
32.8
NK_63
32.6
NK_64
30.5
NK_65
30.4
NK_66
29.9
NK_67
29.7
NK_68
28.8
NK_69
27.0
NK_70
26.6
NK_71
26.0
NK_72
24.6
NK_73
24.5
NK_74
23.3
NK_75
22.9
NK_76
20.2
NK_77
19.9
NK_78
19.8
NK_79
19.3
NK_80
19.1
NK_81
19.0
NK_82
18.8
NK_83
18.4
NK_84
18.2
NK_85
16.8
NK_86
14.4
NK_87
13.5
NK_88
12.1
NK_89
10.9
NK_90
10.7
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