A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
1.4
nTPM
Monaco:
31.1
nTPM
Schmiedel:
25.9
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1.4
HPA sample
nTPM
Classical monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.9
P10809_1003
2.6
P10809_1020
0.9
P10809_1039
1.4
P10809_1058
1.1
P10809_1080
1.4
P10809_1107
1.1
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 2.6
Min nTPM: 0.0
P10809_1004
2.1
P10809_1023
0.7
P10809_1042
2.6
P10809_1061
0.0
P10809_1081
1.7
P10809_1108
0.0
Non-classical monocyte nTPM: 1.3
Samples: 5
Max nTPM: 3.2
Min nTPM: 0.0
P10809_1005
3.2
P10809_1053
0.8
P10809_1072
0.0
P10809_1082
1.5
P10809_1109
1.0
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
31.1
Monaco sample
nTPM
Classical monocyte nTPM: 20.6
Samples: 4
Max nTPM: 23.2
Min nTPM: 17.8
RHH5313_R3680
17.8
RHH5221_R3593
23.2
RHH5250_R3622
22.2
RHH5279_R3651
19.2
Intermediate monocyte nTPM: 24.3
Samples: 4
Max nTPM: 36.8
Min nTPM: 12.3
RHH5314_R3681
15.8
RHH5222_R3594
32.4
RHH5251_R3623
36.8
RHH5280_R3652
12.3
Non-classical monocyte nTPM: 31.1
Samples: 4
Max nTPM: 35.8
Min nTPM: 26.9
RHH5315_R3682
35.8
RHH5223_R3595
33.1
RHH5252_R3624
26.9
RHH5281_R3653
28.5
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.9
Schmiedel sample id
TPM
Classical monocyte TPM: 25.4
Samples: 91
Max TPM: 48.7
Min TPM: 7.2
MONOCYTES_1
48.7
MONOCYTES_2
45.6
MONOCYTES_3
44.8
MONOCYTES_4
43.9
MONOCYTES_5
42.4
MONOCYTES_6
41.7
MONOCYTES_7
41.6
MONOCYTES_8
41.5
MONOCYTES_9
41.0
MONOCYTES_10
40.8
MONOCYTES_11
39.5
MONOCYTES_12
39.1
MONOCYTES_13
38.1
MONOCYTES_14
37.9
MONOCYTES_15
37.8
MONOCYTES_16
37.4
MONOCYTES_17
36.7
MONOCYTES_18
36.4
MONOCYTES_19
36.1
MONOCYTES_20
35.5
MONOCYTES_21
35.3
MONOCYTES_22
35.0
MONOCYTES_23
34.6
MONOCYTES_24
33.9
MONOCYTES_25
33.8
MONOCYTES_26
33.4
MONOCYTES_27
31.6
MONOCYTES_28
30.5
MONOCYTES_29
30.1
MONOCYTES_30
30.0
MONOCYTES_31
29.6
MONOCYTES_32
29.5
MONOCYTES_33
29.5
MONOCYTES_34
28.9
MONOCYTES_35
28.5
MONOCYTES_36
27.0
MONOCYTES_37
26.9
MONOCYTES_38
26.7
MONOCYTES_39
26.3
MONOCYTES_40
26.2
MONOCYTES_41
26.2
MONOCYTES_42
25.6
MONOCYTES_43
24.4
MONOCYTES_44
24.3
MONOCYTES_45
23.3
MONOCYTES_46
23.1
MONOCYTES_47
23.0
MONOCYTES_48
22.4
MONOCYTES_49
22.2
MONOCYTES_50
22.0
MONOCYTES_51
21.9
MONOCYTES_52
21.8
MONOCYTES_53
21.7
MONOCYTES_54
20.3
MONOCYTES_55
20.3
MONOCYTES_56
19.9
MONOCYTES_57
19.9
MONOCYTES_58
19.7
MONOCYTES_59
19.4
MONOCYTES_60
19.3
MONOCYTES_61
18.3
MONOCYTES_62
18.1
MONOCYTES_63
18.0
MONOCYTES_64
17.9
MONOCYTES_65
17.8
MONOCYTES_66
17.7
MONOCYTES_67
17.5
MONOCYTES_68
17.3
MONOCYTES_69
17.3
MONOCYTES_70
17.2
MONOCYTES_71
16.9
MONOCYTES_72
16.8
MONOCYTES_73
16.5
MONOCYTES_74
16.4
MONOCYTES_75
15.2
MONOCYTES_76
15.2
MONOCYTES_77
15.1
MONOCYTES_78
14.6
MONOCYTES_79
14.2
MONOCYTES_80
13.9
MONOCYTES_81
13.8
MONOCYTES_82
13.7
MONOCYTES_83
13.1
MONOCYTES_84
12.3
MONOCYTES_85
12.3
MONOCYTES_86
12.0
MONOCYTES_87
11.7
MONOCYTES_88
11.4
MONOCYTES_89
10.5
MONOCYTES_90
9.4
MONOCYTES_91
7.2
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Non-classical monocyte TPM: 25.9
Samples: 90
Max TPM: 57.3
Min TPM: 5.2
M2_1
57.3
M2_2
56.5
M2_3
55.3
M2_4
48.2
M2_5
48.1
M2_6
47.5
M2_7
46.9
M2_8
44.1
M2_9
42.6
M2_10
41.6
M2_11
41.5
M2_12
40.2
M2_13
40.0
M2_14
38.3
M2_15
38.1
M2_16
36.1
M2_17
35.6
M2_18
35.5
M2_19
35.3
M2_20
35.3
M2_21
35.0
M2_22
34.8
M2_23
34.7
M2_24
34.0
M2_25
33.5
M2_26
32.4
M2_27
32.0
M2_28
32.0
M2_29
31.5
M2_30
30.7
M2_31
30.5
M2_32
30.5
M2_33
30.1
M2_34
29.5
M2_35
29.5
M2_36
29.4
M2_37
28.3
M2_38
28.2
M2_39
28.0
M2_40
28.0
M2_41
27.3
M2_42
27.0
M2_43
26.5
M2_44
26.2
M2_45
26.1
M2_46
25.5
M2_47
23.9
M2_48
23.8
M2_49
23.5
M2_50
23.3
M2_51
23.2
M2_52
22.3
M2_53
21.3
M2_54
21.1
M2_55
20.1
M2_56
20.0
M2_57
19.9
M2_58
19.7
M2_59
19.6
M2_60
19.4
M2_61
19.2
M2_62
19.0
M2_63
17.7
M2_64
17.1
M2_65
16.7
M2_66
16.2
M2_67
15.9
M2_68
15.8
M2_69
15.7
M2_70
15.1
M2_71
14.4
M2_72
14.3
M2_73
14.3
M2_74
13.6
M2_75
13.4
M2_76
13.2
M2_77
13.1
M2_78
11.9
M2_79
11.7
M2_80
11.6
M2_81
11.4
M2_82
10.9
M2_83
10.6
M2_84
9.9
M2_85
9.5
M2_86
8.8
M2_87
8.0
M2_88
7.3
M2_89
5.9
M2_90
5.2
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