A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.1
nTPM
Monaco:
86.9
nTPM
Schmiedel:
51.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
16.1
HPA sample
nTPM
Memory B-cell nTPM: 14.6
Samples: 6
Max nTPM: 22.3
Min nTPM: 6.7
P10809_1017
6.7
P10809_1025
10.9
P10809_1044
22.3
P10809_1063
17.3
P10809_1092
15.5
P10809_1105
14.7
Naive B-cell nTPM: 16.1
Samples: 6
Max nTPM: 19.6
Min nTPM: 11.4
P10809_1011
11.4
P10809_1029
18.6
P10809_1048
13.4
P10809_1067
19.6
P10809_1091
17.7
P10809_1104
16.0
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 75.4
Samples: 4
Max nTPM: 92.0
Min nTPM: 56.0
RHH5310_R3677
56.0
RHH5218_R3590
92.0
RHH5247_R3619
74.8
RHH5276_R3648
78.8
Naive B-cell nTPM: 87.0
Samples: 4
Max nTPM: 118.3
Min nTPM: 67.9
RHH5308_R3675
79.0
RHH5216_R3588
67.9
RHH5245_R3617
82.6
RHH5274_R3646
118.3
Non-switched memory B-cell nTPM: 75.8
Samples: 4
Max nTPM: 94.6
Min nTPM: 64.6
RHH5309_R3676
65.6
RHH5217_R3589
94.6
RHH5246_R3618
64.6
RHH5275_R3647
78.4
Plasmablast nTPM: 64.2
Samples: 4
Max nTPM: 74.6
Min nTPM: 52.1
RHH5312_R3679
71.5
RHH5220_R3592
58.4
RHH5249_R3621
52.1
RHH5278_R3650
74.6
Switched memory B-cell nTPM: 79.7
Samples: 4
Max nTPM: 86.8
Min nTPM: 72.9
RHH5311_R3678
72.9
RHH5219_R3591
76.3
RHH5248_R3620
86.8
RHH5277_R3649
82.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
51.0
Schmiedel sample id
TPM
Naive B-cell TPM: 51.0
Samples: 91
Max TPM: 89.4
Min TPM: 21.4
B_CELL_NAIVE_1
89.4
B_CELL_NAIVE_2
82.3
B_CELL_NAIVE_3
82.1
B_CELL_NAIVE_4
78.8
B_CELL_NAIVE_5
78.4
B_CELL_NAIVE_6
72.8
B_CELL_NAIVE_7
71.2
B_CELL_NAIVE_8
69.0
B_CELL_NAIVE_9
67.6
B_CELL_NAIVE_10
63.4
B_CELL_NAIVE_11
60.5
B_CELL_NAIVE_12
60.5
B_CELL_NAIVE_13
58.0
B_CELL_NAIVE_14
58.0
B_CELL_NAIVE_15
57.9
B_CELL_NAIVE_16
57.2
B_CELL_NAIVE_17
57.0
B_CELL_NAIVE_18
56.4
B_CELL_NAIVE_19
56.2
B_CELL_NAIVE_20
55.9
B_CELL_NAIVE_21
55.4
B_CELL_NAIVE_22
55.1
B_CELL_NAIVE_23
54.6
B_CELL_NAIVE_24
53.8
B_CELL_NAIVE_25
53.8
B_CELL_NAIVE_26
53.5
B_CELL_NAIVE_27
53.4
B_CELL_NAIVE_28
53.2
B_CELL_NAIVE_29
53.2
B_CELL_NAIVE_30
53.2
B_CELL_NAIVE_31
53.1
B_CELL_NAIVE_32
52.8
B_CELL_NAIVE_33
52.6
B_CELL_NAIVE_34
52.6
B_CELL_NAIVE_35
52.5
B_CELL_NAIVE_36
52.4
B_CELL_NAIVE_37
52.3
B_CELL_NAIVE_38
51.6
B_CELL_NAIVE_39
51.1
B_CELL_NAIVE_40
50.5
B_CELL_NAIVE_41
50.5
B_CELL_NAIVE_42
50.2
B_CELL_NAIVE_43
49.9
B_CELL_NAIVE_44
49.8
B_CELL_NAIVE_45
49.4
B_CELL_NAIVE_46
49.3
B_CELL_NAIVE_47
49.2
B_CELL_NAIVE_48
49.2
B_CELL_NAIVE_49
49.1
B_CELL_NAIVE_50
49.1
B_CELL_NAIVE_51
48.9
B_CELL_NAIVE_52
48.9
B_CELL_NAIVE_53
48.8
B_CELL_NAIVE_54
48.8
B_CELL_NAIVE_55
48.7
B_CELL_NAIVE_56
48.4
B_CELL_NAIVE_57
48.4
B_CELL_NAIVE_58
48.4
B_CELL_NAIVE_59
48.4
B_CELL_NAIVE_60
48.1
B_CELL_NAIVE_61
47.5
B_CELL_NAIVE_62
46.9
B_CELL_NAIVE_63
46.6
B_CELL_NAIVE_64
44.7
B_CELL_NAIVE_65
44.7
B_CELL_NAIVE_66
44.5
B_CELL_NAIVE_67
44.3
B_CELL_NAIVE_68
44.0
B_CELL_NAIVE_69
44.0
B_CELL_NAIVE_70
43.5
B_CELL_NAIVE_71
43.0
B_CELL_NAIVE_72
42.9
B_CELL_NAIVE_73
42.5
B_CELL_NAIVE_74
42.3
B_CELL_NAIVE_75
41.4
B_CELL_NAIVE_76
41.0
B_CELL_NAIVE_77
40.9
B_CELL_NAIVE_78
40.6
B_CELL_NAIVE_79
40.6
B_CELL_NAIVE_80
40.5
B_CELL_NAIVE_81
40.5
B_CELL_NAIVE_82
40.4
B_CELL_NAIVE_83
40.2
B_CELL_NAIVE_84
40.0
B_CELL_NAIVE_85
39.8
B_CELL_NAIVE_86
39.2
B_CELL_NAIVE_87
39.1
B_CELL_NAIVE_88
38.8
B_CELL_NAIVE_89
37.5
B_CELL_NAIVE_90
25.3
B_CELL_NAIVE_91
21.4
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