A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.5
nTPM
Monaco:
39.0
nTPM
Schmiedel:
13.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.5
HPA sample
nTPM
Classical monocyte nTPM: 6.5
Samples: 6
Max nTPM: 7.9
Min nTPM: 3.6
P10809_1003
3.6
P10809_1020
6.3
P10809_1039
6.8
P10809_1058
7.9
P10809_1080
7.6
P10809_1107
6.6
Intermediate monocyte nTPM: 4.3
Samples: 6
Max nTPM: 9.7
Min nTPM: 0.1
P10809_1004
3.1
P10809_1023
2.9
P10809_1042
4.7
P10809_1061
0.1
P10809_1081
9.7
P10809_1108
5.4
Non-classical monocyte nTPM: 5.3
Samples: 5
Max nTPM: 9.9
Min nTPM: 1.2
P10809_1005
3.7
P10809_1053
6.8
P10809_1072
1.2
P10809_1082
9.9
P10809_1109
5.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.0
Monaco sample
nTPM
Classical monocyte nTPM: 32.2
Samples: 4
Max nTPM: 38.7
Min nTPM: 25.1
RHH5313_R3680
31.6
RHH5221_R3593
38.7
RHH5250_R3622
25.1
RHH5279_R3651
33.4
Intermediate monocyte nTPM: 34.1
Samples: 4
Max nTPM: 36.9
Min nTPM: 30.8
RHH5314_R3681
30.8
RHH5222_R3594
36.9
RHH5251_R3623
33.3
RHH5280_R3652
35.3
Non-classical monocyte nTPM: 39.0
Samples: 4
Max nTPM: 44.6
Min nTPM: 33.8
RHH5315_R3682
39.4
RHH5223_R3595
44.6
RHH5252_R3624
33.8
RHH5281_R3653
38.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.7
Schmiedel sample id
TPM
Classical monocyte TPM: 9.9
Samples: 91
Max TPM: 15.8
Min TPM: 5.7
MONOCYTES_1
15.8
MONOCYTES_2
13.3
MONOCYTES_3
12.7
MONOCYTES_4
12.6
MONOCYTES_5
12.4
MONOCYTES_6
12.0
MONOCYTES_7
12.0
MONOCYTES_8
12.0
MONOCYTES_9
11.8
MONOCYTES_10
11.8
MONOCYTES_11
11.6
MONOCYTES_12
11.6
MONOCYTES_13
11.6
MONOCYTES_14
11.6
MONOCYTES_15
11.5
MONOCYTES_16
11.4
MONOCYTES_17
11.4
MONOCYTES_18
11.4
MONOCYTES_19
11.3
MONOCYTES_20
11.3
MONOCYTES_21
11.3
MONOCYTES_22
11.3
MONOCYTES_23
11.3
MONOCYTES_24
11.1
MONOCYTES_25
11.1
MONOCYTES_26
11.1
MONOCYTES_27
11.0
MONOCYTES_28
10.9
MONOCYTES_29
10.9
MONOCYTES_30
10.8
MONOCYTES_31
10.8
MONOCYTES_32
10.7
MONOCYTES_33
10.7
MONOCYTES_34
10.7
MONOCYTES_35
10.6
MONOCYTES_36
10.6
MONOCYTES_37
10.4
MONOCYTES_38
10.4
MONOCYTES_39
10.4
MONOCYTES_40
10.2
MONOCYTES_41
10.2
MONOCYTES_42
10.2
MONOCYTES_43
10.1
MONOCYTES_44
10.1
MONOCYTES_45
10.0
MONOCYTES_46
9.9
MONOCYTES_47
9.8
MONOCYTES_48
9.8
MONOCYTES_49
9.7
MONOCYTES_50
9.7
MONOCYTES_51
9.7
MONOCYTES_52
9.7
MONOCYTES_53
9.5
MONOCYTES_54
9.5
MONOCYTES_55
9.4
MONOCYTES_56
9.3
MONOCYTES_57
9.3
MONOCYTES_58
9.2
MONOCYTES_59
9.1
MONOCYTES_60
9.1
MONOCYTES_61
9.1
MONOCYTES_62
9.0
MONOCYTES_63
8.9
MONOCYTES_64
8.9
MONOCYTES_65
8.8
MONOCYTES_66
8.8
MONOCYTES_67
8.8
MONOCYTES_68
8.8
MONOCYTES_69
8.7
MONOCYTES_70
8.6
MONOCYTES_71
8.5
MONOCYTES_72
8.5
MONOCYTES_73
8.3
MONOCYTES_74
8.3
MONOCYTES_75
8.3
MONOCYTES_76
8.3
MONOCYTES_77
8.0
MONOCYTES_78
8.0
MONOCYTES_79
7.9
MONOCYTES_80
7.9
MONOCYTES_81
7.8
MONOCYTES_82
7.7
MONOCYTES_83
7.5
MONOCYTES_84
7.4
MONOCYTES_85
7.3
MONOCYTES_86
7.3
MONOCYTES_87
7.2
MONOCYTES_88
7.1
MONOCYTES_89
7.0
MONOCYTES_90
6.9
MONOCYTES_91
5.7
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Non-classical monocyte TPM: 13.7
Samples: 90
Max TPM: 24.8
Min TPM: 8.7
M2_1
24.8
M2_2
22.2
M2_3
19.8
M2_4
19.8
M2_5
18.3
M2_6
18.3
M2_7
17.7
M2_8
17.4
M2_9
17.4
M2_10
17.3
M2_11
16.7
M2_12
16.6
M2_13
16.6
M2_14
16.5
M2_15
16.3
M2_16
16.3
M2_17
16.3
M2_18
16.2
M2_19
16.1
M2_20
16.1
M2_21
16.0
M2_22
15.7
M2_23
15.5
M2_24
15.5
M2_25
15.4
M2_26
15.0
M2_27
14.9
M2_28
14.8
M2_29
14.7
M2_30
14.6
M2_31
14.6
M2_32
14.6
M2_33
14.5
M2_34
14.5
M2_35
14.5
M2_36
14.5
M2_37
14.4
M2_38
14.3
M2_39
14.2
M2_40
13.9
M2_41
13.8
M2_42
13.5
M2_43
13.5
M2_44
13.4
M2_45
13.4
M2_46
13.4
M2_47
13.4
M2_48
13.3
M2_49
13.1
M2_50
13.0
M2_51
13.0
M2_52
13.0
M2_53
12.9
M2_54
12.6
M2_55
12.5
M2_56
12.4
M2_57
12.2
M2_58
12.1
M2_59
12.0
M2_60
12.0
M2_61
11.9
M2_62
11.9
M2_63
11.9
M2_64
11.8
M2_65
11.7
M2_66
11.6
M2_67
11.6
M2_68
11.6
M2_69
11.4
M2_70
11.4
M2_71
11.4
M2_72
11.3
M2_73
11.1
M2_74
11.1
M2_75
11.0
M2_76
11.0
M2_77
10.9
M2_78
10.7
M2_79
10.6
M2_80
10.5
M2_81
10.4
M2_82
10.0
M2_83
10.0
M2_84
9.9
M2_85
9.7
M2_86
9.7
M2_87
9.7
M2_88
9.5
M2_89
9.4
M2_90
8.7
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