A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
10.7
nTPM
Monaco:
33.0
nTPM
Schmiedel:
161.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.7
HPA sample
nTPM
Memory B-cell nTPM: 8.5
Samples: 6
Max nTPM: 11.8
Min nTPM: 4.8
P10809_1017
11.8
P10809_1025
11.1
P10809_1044
4.8
P10809_1063
4.9
P10809_1092
8.0
P10809_1105
10.4
Naive B-cell nTPM: 10.7
Samples: 6
Max nTPM: 13.5
Min nTPM: 8.5
P10809_1011
10.2
P10809_1029
13.5
P10809_1048
12.6
P10809_1067
9.2
P10809_1091
10.1
P10809_1104
8.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
33.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 16.4
Samples: 4
Max nTPM: 22.0
Min nTPM: 10.1
RHH5310_R3677
22.0
RHH5218_R3590
22.0
RHH5247_R3619
11.4
RHH5276_R3648
10.1
Naive B-cell nTPM: 21.2
Samples: 4
Max nTPM: 31.2
Min nTPM: 12.4
RHH5308_R3675
31.2
RHH5216_R3588
20.2
RHH5245_R3617
12.4
RHH5274_R3646
21.0
Non-switched memory B-cell nTPM: 18.5
Samples: 4
Max nTPM: 27.4
Min nTPM: 7.9
RHH5309_R3676
27.4
RHH5217_R3589
18.0
RHH5246_R3618
20.6
RHH5275_R3647
7.9
Plasmablast nTPM: 33.0
Samples: 4
Max nTPM: 41.2
Min nTPM: 24.9
RHH5312_R3679
34.5
RHH5220_R3592
41.2
RHH5249_R3621
31.5
RHH5278_R3650
24.9
Switched memory B-cell nTPM: 20.7
Samples: 4
Max nTPM: 25.5
Min nTPM: 15.0
RHH5311_R3678
15.0
RHH5219_R3591
25.5
RHH5248_R3620
22.8
RHH5277_R3649
19.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
161.5
Schmiedel sample id
TPM
Naive B-cell TPM: 161.5
Samples: 91
Max TPM: 208.2
Min TPM: 118.4
B_CELL_NAIVE_1
208.2
B_CELL_NAIVE_2
201.4
B_CELL_NAIVE_3
198.6
B_CELL_NAIVE_4
197.6
B_CELL_NAIVE_5
193.6
B_CELL_NAIVE_6
193.4
B_CELL_NAIVE_7
191.7
B_CELL_NAIVE_8
188.1
B_CELL_NAIVE_9
186.6
B_CELL_NAIVE_10
186.1
B_CELL_NAIVE_11
184.7
B_CELL_NAIVE_12
182.3
B_CELL_NAIVE_13
180.7
B_CELL_NAIVE_14
180.1
B_CELL_NAIVE_15
178.2
B_CELL_NAIVE_16
175.9
B_CELL_NAIVE_17
175.9
B_CELL_NAIVE_18
175.1
B_CELL_NAIVE_19
174.9
B_CELL_NAIVE_20
174.3
B_CELL_NAIVE_21
174.2
B_CELL_NAIVE_22
173.1
B_CELL_NAIVE_23
172.7
B_CELL_NAIVE_24
172.1
B_CELL_NAIVE_25
171.9
B_CELL_NAIVE_26
170.6
B_CELL_NAIVE_27
170.5
B_CELL_NAIVE_28
170.1
B_CELL_NAIVE_29
168.4
B_CELL_NAIVE_30
168.2
B_CELL_NAIVE_31
168.1
B_CELL_NAIVE_32
167.9
B_CELL_NAIVE_33
166.7
B_CELL_NAIVE_34
166.2
B_CELL_NAIVE_35
165.4
B_CELL_NAIVE_36
164.7
B_CELL_NAIVE_37
164.1
B_CELL_NAIVE_38
163.8
B_CELL_NAIVE_39
163.6
B_CELL_NAIVE_40
163.0
B_CELL_NAIVE_41
162.3
B_CELL_NAIVE_42
161.6
B_CELL_NAIVE_43
161.1
B_CELL_NAIVE_44
161.0
B_CELL_NAIVE_45
160.2
B_CELL_NAIVE_46
160.1
B_CELL_NAIVE_47
160.1
B_CELL_NAIVE_48
159.7
B_CELL_NAIVE_49
159.2
B_CELL_NAIVE_50
159.0
B_CELL_NAIVE_51
157.8
B_CELL_NAIVE_52
157.7
B_CELL_NAIVE_53
156.5
B_CELL_NAIVE_54
156.4
B_CELL_NAIVE_55
156.3
B_CELL_NAIVE_56
155.9
B_CELL_NAIVE_57
154.9
B_CELL_NAIVE_58
154.5
B_CELL_NAIVE_59
153.9
B_CELL_NAIVE_60
153.8
B_CELL_NAIVE_61
153.5
B_CELL_NAIVE_62
153.3
B_CELL_NAIVE_63
152.3
B_CELL_NAIVE_64
152.3
B_CELL_NAIVE_65
151.6
B_CELL_NAIVE_66
151.3
B_CELL_NAIVE_67
151.3
B_CELL_NAIVE_68
150.0
B_CELL_NAIVE_69
149.1
B_CELL_NAIVE_70
149.0
B_CELL_NAIVE_71
147.3
B_CELL_NAIVE_72
146.6
B_CELL_NAIVE_73
146.5
B_CELL_NAIVE_74
145.9
B_CELL_NAIVE_75
145.5
B_CELL_NAIVE_76
145.2
B_CELL_NAIVE_77
144.1
B_CELL_NAIVE_78
143.7
B_CELL_NAIVE_79
143.4
B_CELL_NAIVE_80
142.7
B_CELL_NAIVE_81
142.2
B_CELL_NAIVE_82
141.8
B_CELL_NAIVE_83
137.9
B_CELL_NAIVE_84
137.4
B_CELL_NAIVE_85
137.0
B_CELL_NAIVE_86
136.9
B_CELL_NAIVE_87
136.8
B_CELL_NAIVE_88
130.6
B_CELL_NAIVE_89
128.2
B_CELL_NAIVE_90
126.7
B_CELL_NAIVE_91
118.4
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.