A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
20.9
nTPM
Monaco:
32.7
nTPM
Schmiedel:
76.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.9
HPA sample
nTPM
Classical monocyte nTPM: 19.6
Samples: 6
Max nTPM: 22.4
Min nTPM: 15.6
P10809_1003
15.6
P10809_1020
22.4
P10809_1039
21.9
P10809_1058
16.1
P10809_1080
20.9
P10809_1107
20.4
Intermediate monocyte nTPM: 20.9
Samples: 6
Max nTPM: 28.4
Min nTPM: 16.8
P10809_1004
17.1
P10809_1023
22.1
P10809_1042
21.0
P10809_1061
16.8
P10809_1081
20.0
P10809_1108
28.4
Non-classical monocyte nTPM: 16.3
Samples: 5
Max nTPM: 21.5
Min nTPM: 10.1
P10809_1005
14.6
P10809_1053
18.8
P10809_1072
10.1
P10809_1082
16.4
P10809_1109
21.5
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.7
Monaco sample
nTPM
Classical monocyte nTPM: 32.7
Samples: 4
Max nTPM: 43.0
Min nTPM: 24.4
RHH5313_R3680
24.4
RHH5221_R3593
33.8
RHH5250_R3622
43.0
RHH5279_R3651
29.6
Intermediate monocyte nTPM: 32.2
Samples: 4
Max nTPM: 37.5
Min nTPM: 22.8
RHH5314_R3681
37.5
RHH5222_R3594
22.8
RHH5251_R3623
32.7
RHH5280_R3652
35.6
Non-classical monocyte nTPM: 29.2
Samples: 4
Max nTPM: 38.0
Min nTPM: 17.8
RHH5315_R3682
29.6
RHH5223_R3595
17.8
RHH5252_R3624
38.0
RHH5281_R3653
31.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
76.4
Schmiedel sample id
TPM
Classical monocyte TPM: 75.0
Samples: 91
Max TPM: 96.8
Min TPM: 55.5
MONOCYTES_1
96.8
MONOCYTES_2
90.9
MONOCYTES_3
90.0
MONOCYTES_4
86.6
MONOCYTES_5
85.9
MONOCYTES_6
85.9
MONOCYTES_7
85.2
MONOCYTES_8
84.3
MONOCYTES_9
83.9
MONOCYTES_10
83.5
MONOCYTES_11
83.5
MONOCYTES_12
83.1
MONOCYTES_13
82.8
MONOCYTES_14
81.5
MONOCYTES_15
81.2
MONOCYTES_16
80.7
MONOCYTES_17
80.3
MONOCYTES_18
80.1
MONOCYTES_19
80.0
MONOCYTES_20
80.0
MONOCYTES_21
79.9
MONOCYTES_22
79.6
MONOCYTES_23
78.9
MONOCYTES_24
78.7
MONOCYTES_25
78.3
MONOCYTES_26
78.2
MONOCYTES_27
77.8
MONOCYTES_28
77.1
MONOCYTES_29
77.0
MONOCYTES_30
77.0
MONOCYTES_31
76.7
MONOCYTES_32
76.6
MONOCYTES_33
76.5
MONOCYTES_34
76.3
MONOCYTES_35
76.2
MONOCYTES_36
76.2
MONOCYTES_37
75.9
MONOCYTES_38
75.9
MONOCYTES_39
75.4
MONOCYTES_40
75.3
MONOCYTES_41
75.2
MONOCYTES_42
75.2
MONOCYTES_43
75.2
MONOCYTES_44
75.2
MONOCYTES_45
75.1
MONOCYTES_46
75.0
MONOCYTES_47
74.6
MONOCYTES_48
74.6
MONOCYTES_49
74.6
MONOCYTES_50
74.4
MONOCYTES_51
74.4
MONOCYTES_52
73.9
MONOCYTES_53
73.8
MONOCYTES_54
73.8
MONOCYTES_55
73.7
MONOCYTES_56
73.1
MONOCYTES_57
73.1
MONOCYTES_58
73.0
MONOCYTES_59
72.6
MONOCYTES_60
72.6
MONOCYTES_61
72.4
MONOCYTES_62
72.4
MONOCYTES_63
71.4
MONOCYTES_64
71.3
MONOCYTES_65
71.1
MONOCYTES_66
71.0
MONOCYTES_67
70.7
MONOCYTES_68
70.7
MONOCYTES_69
70.5
MONOCYTES_70
70.2
MONOCYTES_71
70.0
MONOCYTES_72
69.7
MONOCYTES_73
69.3
MONOCYTES_74
69.0
MONOCYTES_75
68.9
MONOCYTES_76
68.9
MONOCYTES_77
68.8
MONOCYTES_78
68.2
MONOCYTES_79
68.0
MONOCYTES_80
67.8
MONOCYTES_81
67.6
MONOCYTES_82
67.4
MONOCYTES_83
67.1
MONOCYTES_84
66.5
MONOCYTES_85
66.5
MONOCYTES_86
66.4
MONOCYTES_87
66.2
MONOCYTES_88
63.4
MONOCYTES_89
62.6
MONOCYTES_90
61.6
MONOCYTES_91
55.5
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Non-classical monocyte TPM: 76.4
Samples: 90
Max TPM: 96.2
Min TPM: 52.6
M2_1
96.2
M2_2
95.3
M2_3
91.7
M2_4
91.0
M2_5
90.8
M2_6
90.4
M2_7
89.4
M2_8
89.4
M2_9
89.2
M2_10
89.1
M2_11
88.3
M2_12
86.5
M2_13
86.4
M2_14
86.0
M2_15
85.1
M2_16
84.9
M2_17
84.4
M2_18
83.8
M2_19
83.8
M2_20
83.4
M2_21
83.2
M2_22
83.2
M2_23
83.1
M2_24
83.1
M2_25
82.9
M2_26
82.3
M2_27
82.2
M2_28
81.1
M2_29
81.0
M2_30
80.8
M2_31
79.9
M2_32
79.5
M2_33
79.0
M2_34
78.5
M2_35
77.7
M2_36
77.6
M2_37
77.6
M2_38
77.6
M2_39
77.4
M2_40
76.8
M2_41
76.7
M2_42
76.4
M2_43
76.3
M2_44
76.1
M2_45
75.9
M2_46
75.7
M2_47
75.5
M2_48
75.2
M2_49
75.0
M2_50
74.9
M2_51
74.9
M2_52
74.9
M2_53
73.8
M2_54
73.8
M2_55
73.7
M2_56
73.5
M2_57
73.5
M2_58
72.6
M2_59
72.5
M2_60
72.4
M2_61
72.2
M2_62
72.0
M2_63
72.0
M2_64
71.9
M2_65
71.9
M2_66
71.5
M2_67
71.2
M2_68
70.8
M2_69
70.8
M2_70
70.5
M2_71
70.4
M2_72
69.9
M2_73
69.8
M2_74
69.5
M2_75
68.6
M2_76
68.3
M2_77
67.8
M2_78
67.2
M2_79
66.7
M2_80
65.9
M2_81
65.9
M2_82
65.5
M2_83
63.3
M2_84
62.6
M2_85
62.3
M2_86
62.2
M2_87
62.0
M2_88
62.0
M2_89
58.6
M2_90
52.6
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