A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
0.7
nTPM
Monaco:
17.1
nTPM
Schmiedel:
59.0
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
0.7
HPA sample
nTPM
NK-cell nTPM: 0.8
Samples: 6
Max nTPM: 1.1
Min nTPM: 0.1
P10809_1013
1.1
P10809_1033
1.0
P10809_1052
0.3
P10809_1071
1.0
P10809_1093
0.1
P10809_1103
1.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.1
Monaco sample
nTPM
NK-cell nTPM: 17.1
Samples: 4
Max nTPM: 20.0
Min nTPM: 15.3
RHH5316_R3683
20.0
RHH5224_R3596
17.6
RHH5253_R3625
15.3
RHH5282_R3654
15.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
59.0
Schmiedel sample id
TPM
NK-cell TPM: 59.0
Samples: 90
Max TPM: 76.2
Min TPM: 40.9
NK_1
76.2
NK_2
73.2
NK_3
72.5
NK_4
72.1
NK_5
71.7
NK_6
70.7
NK_7
68.6
NK_8
68.1
NK_9
67.8
NK_10
66.8
NK_11
66.7
NK_12
66.5
NK_13
66.5
NK_14
66.2
NK_15
66.2
NK_16
65.8
NK_17
65.4
NK_18
65.4
NK_19
65.1
NK_20
64.9
NK_21
64.4
NK_22
64.2
NK_23
63.8
NK_24
63.5
NK_25
63.4
NK_26
63.4
NK_27
62.7
NK_28
62.4
NK_29
62.3
NK_30
62.2
NK_31
62.1
NK_32
62.1
NK_33
61.6
NK_34
61.5
NK_35
61.1
NK_36
60.9
NK_37
60.6
NK_38
60.2
NK_39
59.9
NK_40
59.9
NK_41
59.8
NK_42
59.6
NK_43
59.5
NK_44
59.5
NK_45
59.1
NK_46
59.0
NK_47
58.9
NK_48
57.7
NK_49
57.7
NK_50
57.6
NK_51
57.3
NK_52
57.1
NK_53
57.1
NK_54
57.0
NK_55
57.0
NK_56
56.7
NK_57
56.7
NK_58
56.6
NK_59
56.4
NK_60
56.1
NK_61
55.6
NK_62
55.5
NK_63
55.1
NK_64
55.1
NK_65
55.0
NK_66
54.8
NK_67
54.8
NK_68
54.0
NK_69
53.7
NK_70
53.7
NK_71
53.6
NK_72
53.5
NK_73
52.8
NK_74
52.7
NK_75
52.6
NK_76
52.5
NK_77
51.7
NK_78
51.6
NK_79
51.6
NK_80
51.2
NK_81
51.0
NK_82
50.6
NK_83
49.7
NK_84
49.7
NK_85
48.7
NK_86
48.2
NK_87
48.1
NK_88
46.9
NK_89
42.3
NK_90
40.9
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