A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.1
nTPM
Monaco:
18.6
nTPM
Schmiedel:
37.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.1
HPA sample
nTPM
Classical monocyte nTPM: 1.0
Samples: 6
Max nTPM: 1.4
Min nTPM: 0.6
P10809_1003
1.4
P10809_1020
1.0
P10809_1039
0.6
P10809_1058
1.1
P10809_1080
0.9
P10809_1107
0.9
Intermediate monocyte nTPM: 1.2
Samples: 6
Max nTPM: 2.7
Min nTPM: 0.2
P10809_1004
1.2
P10809_1023
1.2
P10809_1042
0.2
P10809_1061
2.7
P10809_1081
0.9
P10809_1108
0.7
Non-classical monocyte nTPM: 2.1
Samples: 5
Max nTPM: 6.0
Min nTPM: 0.5
P10809_1005
1.1
P10809_1053
0.5
P10809_1072
6.0
P10809_1082
1.8
P10809_1109
1.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
18.6
Monaco sample
nTPM
Classical monocyte nTPM: 12.8
Samples: 4
Max nTPM: 15.8
Min nTPM: 6.2
RHH5313_R3680
14.7
RHH5221_R3593
6.2
RHH5250_R3622
15.8
RHH5279_R3651
14.4
Intermediate monocyte nTPM: 16.1
Samples: 4
Max nTPM: 17.4
Min nTPM: 14.3
RHH5314_R3681
17.2
RHH5222_R3594
15.5
RHH5251_R3623
17.4
RHH5280_R3652
14.3
Non-classical monocyte nTPM: 18.6
Samples: 4
Max nTPM: 20.7
Min nTPM: 16.6
RHH5315_R3682
18.9
RHH5223_R3595
16.6
RHH5252_R3624
18.3
RHH5281_R3653
20.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.1
Schmiedel sample id
TPM
Classical monocyte TPM: 23.8
Samples: 91
Max TPM: 40.7
Min TPM: 11.4
MONOCYTES_1
40.7
MONOCYTES_2
34.7
MONOCYTES_3
34.2
MONOCYTES_4
34.1
MONOCYTES_5
33.1
MONOCYTES_6
31.9
MONOCYTES_7
31.8
MONOCYTES_8
30.9
MONOCYTES_9
30.7
MONOCYTES_10
30.7
MONOCYTES_11
29.8
MONOCYTES_12
29.4
MONOCYTES_13
29.1
MONOCYTES_14
29.0
MONOCYTES_15
28.4
MONOCYTES_16
28.3
MONOCYTES_17
28.0
MONOCYTES_18
28.0
MONOCYTES_19
27.9
MONOCYTES_20
27.9
MONOCYTES_21
27.9
MONOCYTES_22
27.7
MONOCYTES_23
27.3
MONOCYTES_24
27.1
MONOCYTES_25
27.0
MONOCYTES_26
26.9
MONOCYTES_27
26.9
MONOCYTES_28
26.5
MONOCYTES_29
26.4
MONOCYTES_30
26.2
MONOCYTES_31
26.0
MONOCYTES_32
25.8
MONOCYTES_33
25.8
MONOCYTES_34
25.6
MONOCYTES_35
25.1
MONOCYTES_36
24.8
MONOCYTES_37
24.5
MONOCYTES_38
24.4
MONOCYTES_39
24.3
MONOCYTES_40
23.9
MONOCYTES_41
23.8
MONOCYTES_42
23.8
MONOCYTES_43
23.6
MONOCYTES_44
23.6
MONOCYTES_45
23.4
MONOCYTES_46
23.2
MONOCYTES_47
23.1
MONOCYTES_48
23.1
MONOCYTES_49
22.5
MONOCYTES_50
22.2
MONOCYTES_51
22.1
MONOCYTES_52
21.9
MONOCYTES_53
21.8
MONOCYTES_54
21.6
MONOCYTES_55
21.6
MONOCYTES_56
21.5
MONOCYTES_57
21.1
MONOCYTES_58
20.9
MONOCYTES_59
20.9
MONOCYTES_60
20.7
MONOCYTES_61
20.7
MONOCYTES_62
20.6
MONOCYTES_63
20.6
MONOCYTES_64
20.4
MONOCYTES_65
20.3
MONOCYTES_66
20.2
MONOCYTES_67
20.2
MONOCYTES_68
19.9
MONOCYTES_69
19.9
MONOCYTES_70
19.9
MONOCYTES_71
19.8
MONOCYTES_72
19.6
MONOCYTES_73
19.6
MONOCYTES_74
19.5
MONOCYTES_75
19.5
MONOCYTES_76
19.4
MONOCYTES_77
19.4
MONOCYTES_78
19.3
MONOCYTES_79
19.3
MONOCYTES_80
19.0
MONOCYTES_81
18.7
MONOCYTES_82
18.6
MONOCYTES_83
18.2
MONOCYTES_84
18.2
MONOCYTES_85
18.0
MONOCYTES_86
17.4
MONOCYTES_87
17.2
MONOCYTES_88
16.0
MONOCYTES_89
15.7
MONOCYTES_90
15.5
MONOCYTES_91
11.4
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Non-classical monocyte TPM: 37.1
Samples: 90
Max TPM: 60.0
Min TPM: 20.4
M2_1
60.0
M2_2
53.4
M2_3
51.6
M2_4
50.6
M2_5
50.0
M2_6
49.9
M2_7
49.1
M2_8
49.0
M2_9
48.8
M2_10
47.8
M2_11
47.3
M2_12
46.5
M2_13
45.1
M2_14
44.6
M2_15
44.3
M2_16
43.9
M2_17
43.5
M2_18
43.4
M2_19
43.1
M2_20
42.5
M2_21
42.5
M2_22
42.2
M2_23
42.1
M2_24
41.6
M2_25
41.4
M2_26
41.0
M2_27
40.6
M2_28
40.5
M2_29
40.4
M2_30
40.4
M2_31
40.4
M2_32
39.7
M2_33
39.6
M2_34
39.6
M2_35
39.5
M2_36
39.3
M2_37
39.1
M2_38
39.0
M2_39
38.8
M2_40
38.6
M2_41
38.6
M2_42
38.4
M2_43
38.3
M2_44
38.0
M2_45
37.6
M2_46
37.4
M2_47
37.1
M2_48
37.1
M2_49
36.8
M2_50
36.5
M2_51
35.8
M2_52
35.7
M2_53
35.6
M2_54
35.0
M2_55
34.9
M2_56
34.8
M2_57
34.4
M2_58
33.7
M2_59
33.7
M2_60
33.5
M2_61
33.2
M2_62
32.6
M2_63
32.5
M2_64
32.5
M2_65
32.0
M2_66
31.9
M2_67
31.7
M2_68
31.0
M2_69
30.8
M2_70
30.6
M2_71
30.1
M2_72
29.4
M2_73
29.4
M2_74
29.2
M2_75
28.9
M2_76
28.6
M2_77
28.6
M2_78
28.4
M2_79
28.0
M2_80
27.9
M2_81
27.3
M2_82
27.3
M2_83
25.9
M2_84
25.6
M2_85
25.0
M2_86
24.6
M2_87
24.4
M2_88
24.3
M2_89
21.1
M2_90
20.4
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