MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.8 nTPM
HPA Brain:81.4 nTPM
GTEx:13.8 nTPM
FANTOM5:6.7 Scaled Tags Per Million
Pig:45.6 nTPM
Mouse:7.0 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 81.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.3
2219 Male, age 76, both hemispheres 64.9
2586 Male, age 75, left hemisphere 42.0
1833 Male, age 53, unknown 26.0
2411 Female, age 72, unknown 24.0
2828 Female, age 72, unknown 21.5
1830 Male, age 51, unknown 17.6
2666 Male, age 74, left hemisphere 17.6
1870 Female, age 42, unknown 15.9
1827 Male, age 72, unknown 13.6
2019 Male, age 18, unknown 10.3
Dorsal raphe nucleus
nTPM: 46.4
2047 Male, age 72, unknown 58.8
2298 Female, age 72, unknown 50.5
1828 Male, age 53, unknown 50.3
2016 Female, age 72, unknown 49.6
2750 Male, age 76, both hemispheres 22.7
Inferior colliculus
nTPM: 20.5
1890 Male, age 53, unknown 32.2
2097 Female, age 72, unknown 21.4
2849 Male, age 72, unknown 15.6
1848 Female, age 42, unknown 12.7
Median raphe nucleus
nTPM: 33.7
2220 Male, age 76, midline 33.7
Periaquaductal grey, anterior
nTPM: 16.6
1795 Male, age 51, unknown 18.5
1947 Male, age 18, unknown 16.7
2502 Female, age 75, unknown 14.7
Periaquaductal grey, dorsal
nTPM: 25.3
2850 Male, age 76, both hemispheres 35.7
1840 Male, age 53, unknown 27.3
2464 Female, age 72, unknown 24.4
1831 Male, age 72, unknown 13.9
Periaquaductal grey, lateral
nTPM: 19.6
2140 Male, age 76, both hemispheres 25.8
2053 Male, age 18, unknown 16.8
2272 Male, age 74, both hemispheres 16.1
Pretectal area
nTPM: 15.1
2224 Female, age 72, unknown 28.2
2825 Male, age 18, unknown 19.5
2667 Female, age 75, unknown 18.1
2273 Male, age 74, both hemispheres 15.5
1944 Female, age 72, unknown 14.9
2407 Male, age 75, both hemispheres 14.3
1817 Female, age 42, unknown 11.7
2007 Male, age 72, unknown 11.6
2316 Male, age 76, right hemisphere 11.5
1815 Male, age 53, unknown 11.1
1816 Male, age 51, unknown 9.2
Red nucleus
nTPM: 20.7
2584 Male, age 75, left hemisphere 32.2
2725 Female, age 75, unknown 29.9
2769 Male, age 72, unknown 23.0
2227 Male, age 72, unknown 22.7
2588 Male, age 74, left hemisphere 21.4
1904 Male, age 53, unknown 20.1
1821 Female, age 72, unknown 19.9
2503 Female, age 72, unknown 18.6
1954 Female, age 42, unknown 18.3
1865 Male, age 51, unknown 15.5
2823 Male, age 76, right hemisphere 14.2
2785 Male, age 18, unknown 12.2
Substantia nigra
nTPM: 81.4
2699 Male, age 18, unknown 163.9
1916 Female, age 42, unknown 137.6
2241 Male, age 72, unknown 112.4
1851 Male, age 51, unknown 109.6
2665 Male, age 74, both hemispheres 77.0
1941 Male, age 53, unknown 59.6
2409 Female, age 72, unknown 58.1
2583 Male, age 75, right hemisphere 39.7
2590 Female, age 75, unknown 33.3
1889 Female, age 72, unknown 23.0
Superior colliculus
nTPM: 13.9
1995 Male, age 72, unknown 19.5
2664 Male, age 75, both hemispheres 18.7
2668 Female, age 75, unknown 16.8
2261 Male, age 18, unknown 15.4
2087 Female, age 72, unknown 14.0
2587 Male, age 74, left hemisphere 12.4
1796 Male, age 53, unknown 12.3
1913 Female, age 42, unknown 12.0
1839 Male, age 51, unknown 10.9
1895 Male, age 76, right hemisphere 6.7
Ventral tegmental area
nTPM: 69.8
1942 Male, age 51, unknown 103.7
2218 Male, age 76, both hemispheres 96.3
1915 Female, age 42, unknown 88.9
2410 Female, age 72, unknown 60.2
2021 Male, age 53, unknown 39.7
2223 Female, age 72, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.8
Samples: 183

Max nTPM: 44.4
Min nTPM: 1.1
Std nTPM: 9.2
Median nTPM: 11.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 44.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 42.7
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 37.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 36.2
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 35.3
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 34.5
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 34.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 33.3
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 32.4
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 32.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 30.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 6.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.7
FF:10158-103A5 76 years, female 6.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.6
Samples: 4

Max nTPM: 68.7
Min nTPM: 17.8
Sample A Female 64.8
Sample B Female 31.2
Sample C Male 68.7
Sample D Male 17.8
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 32.5
Min nTPM: 12.6
Sample A Female 32.5
Sample B Female 20.2
Sample C Male 15.2
Sample D Male 12.6
Periaqueductal gray
nTPM: 16.6
Samples: 3

Max nTPM: 21.9
Min nTPM: 13.6
Sample B Female 13.6
Sample C Male 21.9
Sample D Male 14.2
Superior colliculi
nTPM: 16.2
Samples: 4

Max nTPM: 18.0
Min nTPM: 14.3
Sample A Female 17.3
Sample B Female 18.0
Sample C Male 15.1
Sample D Male 14.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 7.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.1
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.5
Sample A Male 6.5
Sample B Male 7.4
Sample C Female 6.8
Sample D Female 7.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71234678 Antisense, RP_050505_03_A05, Mouse strain C57BL/6J (56 days, male) 0.7
74511838 Antisense, RP_060220_03_B08, Mouse strain C57BL/6J (56 days, male) 0.5

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