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BETA
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  • KARS1
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:109.8 nTPM
Monaco:315.7 nTPM
Schmiedel:117.6 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

109.8
HPA sample nTPM
Memory B-cell
nTPM: 109.8
Samples: 6

Max nTPM: 134.3
Min nTPM: 81.8
P10809_1017 134.3
P10809_1025 129.6
P10809_1044 81.8
P10809_1063 90.1
P10809_1092 95.5
P10809_1105 127.6
Naive B-cell
nTPM: 91.9
Samples: 6

Max nTPM: 101.2
Min nTPM: 75.2
P10809_1011 82.9
P10809_1029 101.2
P10809_1048 98.8
P10809_1067 75.2
P10809_1091 96.6
P10809_1104 96.9

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

315.7
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 205.1
Samples: 4

Max nTPM: 239.5
Min nTPM: 163.5
RHH5310_R3677 239.5
RHH5218_R3590 216.7
RHH5247_R3619 163.5
RHH5276_R3648 200.7
Naive B-cell
nTPM: 193.3
Samples: 4

Max nTPM: 227.9
Min nTPM: 161.8
RHH5308_R3675 176.8
RHH5216_R3588 227.9
RHH5245_R3617 161.8
RHH5274_R3646 206.7
Non-switched memory B-cell
nTPM: 202.3
Samples: 4

Max nTPM: 263.4
Min nTPM: 172.7
RHH5309_R3676 183.3
RHH5217_R3589 263.4
RHH5246_R3618 172.7
RHH5275_R3647 189.6
Plasmablast
nTPM: 315.8
Samples: 4

Max nTPM: 334.2
Min nTPM: 275.1
RHH5312_R3679 331.8
RHH5220_R3592 334.2
RHH5249_R3621 321.9
RHH5278_R3650 275.1
Switched memory B-cell
nTPM: 243.4
Samples: 4

Max nTPM: 287.0
Min nTPM: 217.2
RHH5311_R3678 234.3
RHH5219_R3591 235.1
RHH5248_R3620 287.0
RHH5277_R3649 217.2

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

117.6
Schmiedel sample id TPM
Naive B-cell
TPM: 117.6
Samples: 91

Max TPM: 134.5
Min TPM: 95.1
B_CELL_NAIVE_1 134.5
B_CELL_NAIVE_2 133.8
B_CELL_NAIVE_3 133.7
B_CELL_NAIVE_4 132.1
B_CELL_NAIVE_5 130.1
B_CELL_NAIVE_6 130.0
B_CELL_NAIVE_7 128.6
B_CELL_NAIVE_8 127.5
B_CELL_NAIVE_9 127.4
B_CELL_NAIVE_10 127.0
B_CELL_NAIVE_11 126.7
B_CELL_NAIVE_12 126.5
B_CELL_NAIVE_13 126.1
B_CELL_NAIVE_14 125.9
B_CELL_NAIVE_15 125.7
B_CELL_NAIVE_16 125.2
B_CELL_NAIVE_17 124.7
B_CELL_NAIVE_18 124.7
B_CELL_NAIVE_19 124.4
B_CELL_NAIVE_20 124.2
B_CELL_NAIVE_21 123.9
B_CELL_NAIVE_22 123.8
B_CELL_NAIVE_23 123.8
B_CELL_NAIVE_24 123.6
B_CELL_NAIVE_25 123.1
B_CELL_NAIVE_26 122.9
B_CELL_NAIVE_27 122.3
B_CELL_NAIVE_28 121.9
B_CELL_NAIVE_29 121.7
B_CELL_NAIVE_30 121.3
B_CELL_NAIVE_31 121.2
B_CELL_NAIVE_32 121.0
B_CELL_NAIVE_33 120.4
B_CELL_NAIVE_34 120.4
B_CELL_NAIVE_35 120.3
B_CELL_NAIVE_36 120.0
B_CELL_NAIVE_37 119.9
B_CELL_NAIVE_38 119.8
B_CELL_NAIVE_39 119.4
B_CELL_NAIVE_40 119.2
B_CELL_NAIVE_41 119.1
B_CELL_NAIVE_42 119.1
B_CELL_NAIVE_43 118.6
B_CELL_NAIVE_44 118.5
B_CELL_NAIVE_45 118.2
B_CELL_NAIVE_46 117.8
B_CELL_NAIVE_47 117.7
B_CELL_NAIVE_48 117.6
B_CELL_NAIVE_49 116.9
B_CELL_NAIVE_50 116.8
B_CELL_NAIVE_51 116.8
B_CELL_NAIVE_52 116.7
B_CELL_NAIVE_53 116.6
B_CELL_NAIVE_54 116.5
B_CELL_NAIVE_55 116.3
B_CELL_NAIVE_56 116.2
B_CELL_NAIVE_57 116.1
B_CELL_NAIVE_58 116.0
B_CELL_NAIVE_59 115.9
B_CELL_NAIVE_60 115.7
B_CELL_NAIVE_61 115.6
B_CELL_NAIVE_62 115.6
B_CELL_NAIVE_63 115.1
B_CELL_NAIVE_64 114.8
B_CELL_NAIVE_65 114.6
B_CELL_NAIVE_66 114.5
B_CELL_NAIVE_67 114.2
B_CELL_NAIVE_68 114.0
B_CELL_NAIVE_69 113.4
B_CELL_NAIVE_70 113.0
B_CELL_NAIVE_71 112.9
B_CELL_NAIVE_72 112.6
B_CELL_NAIVE_73 112.5
B_CELL_NAIVE_74 111.0
B_CELL_NAIVE_75 110.5
B_CELL_NAIVE_76 110.4
B_CELL_NAIVE_77 108.7
B_CELL_NAIVE_78 108.6
B_CELL_NAIVE_79 108.4
B_CELL_NAIVE_80 108.1
B_CELL_NAIVE_81 108.1
B_CELL_NAIVE_82 107.0
B_CELL_NAIVE_83 105.8
B_CELL_NAIVE_84 105.7
B_CELL_NAIVE_85 103.7
B_CELL_NAIVE_86 102.4
B_CELL_NAIVE_87 100.5
B_CELL_NAIVE_88 99.3
B_CELL_NAIVE_89 98.3
B_CELL_NAIVE_90 97.1
B_CELL_NAIVE_91 95.1
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