A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
109.8
nTPM
Monaco:
315.7
nTPM
Schmiedel:
117.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
109.8
HPA sample
nTPM
Memory B-cell nTPM: 109.8
Samples: 6
Max nTPM: 134.3
Min nTPM: 81.8
P10809_1017
134.3
P10809_1025
129.6
P10809_1044
81.8
P10809_1063
90.1
P10809_1092
95.5
P10809_1105
127.6
Naive B-cell nTPM: 91.9
Samples: 6
Max nTPM: 101.2
Min nTPM: 75.2
P10809_1011
82.9
P10809_1029
101.2
P10809_1048
98.8
P10809_1067
75.2
P10809_1091
96.6
P10809_1104
96.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
315.7
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 205.1
Samples: 4
Max nTPM: 239.5
Min nTPM: 163.5
RHH5310_R3677
239.5
RHH5218_R3590
216.7
RHH5247_R3619
163.5
RHH5276_R3648
200.7
Naive B-cell nTPM: 193.3
Samples: 4
Max nTPM: 227.9
Min nTPM: 161.8
RHH5308_R3675
176.8
RHH5216_R3588
227.9
RHH5245_R3617
161.8
RHH5274_R3646
206.7
Non-switched memory B-cell nTPM: 202.3
Samples: 4
Max nTPM: 263.4
Min nTPM: 172.7
RHH5309_R3676
183.3
RHH5217_R3589
263.4
RHH5246_R3618
172.7
RHH5275_R3647
189.6
Plasmablast nTPM: 315.8
Samples: 4
Max nTPM: 334.2
Min nTPM: 275.1
RHH5312_R3679
331.8
RHH5220_R3592
334.2
RHH5249_R3621
321.9
RHH5278_R3650
275.1
Switched memory B-cell nTPM: 243.4
Samples: 4
Max nTPM: 287.0
Min nTPM: 217.2
RHH5311_R3678
234.3
RHH5219_R3591
235.1
RHH5248_R3620
287.0
RHH5277_R3649
217.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
117.6
Schmiedel sample id
TPM
Naive B-cell TPM: 117.6
Samples: 91
Max TPM: 134.5
Min TPM: 95.1
B_CELL_NAIVE_1
134.5
B_CELL_NAIVE_2
133.8
B_CELL_NAIVE_3
133.7
B_CELL_NAIVE_4
132.1
B_CELL_NAIVE_5
130.1
B_CELL_NAIVE_6
130.0
B_CELL_NAIVE_7
128.6
B_CELL_NAIVE_8
127.5
B_CELL_NAIVE_9
127.4
B_CELL_NAIVE_10
127.0
B_CELL_NAIVE_11
126.7
B_CELL_NAIVE_12
126.5
B_CELL_NAIVE_13
126.1
B_CELL_NAIVE_14
125.9
B_CELL_NAIVE_15
125.7
B_CELL_NAIVE_16
125.2
B_CELL_NAIVE_17
124.7
B_CELL_NAIVE_18
124.7
B_CELL_NAIVE_19
124.4
B_CELL_NAIVE_20
124.2
B_CELL_NAIVE_21
123.9
B_CELL_NAIVE_22
123.8
B_CELL_NAIVE_23
123.8
B_CELL_NAIVE_24
123.6
B_CELL_NAIVE_25
123.1
B_CELL_NAIVE_26
122.9
B_CELL_NAIVE_27
122.3
B_CELL_NAIVE_28
121.9
B_CELL_NAIVE_29
121.7
B_CELL_NAIVE_30
121.3
B_CELL_NAIVE_31
121.2
B_CELL_NAIVE_32
121.0
B_CELL_NAIVE_33
120.4
B_CELL_NAIVE_34
120.4
B_CELL_NAIVE_35
120.3
B_CELL_NAIVE_36
120.0
B_CELL_NAIVE_37
119.9
B_CELL_NAIVE_38
119.8
B_CELL_NAIVE_39
119.4
B_CELL_NAIVE_40
119.2
B_CELL_NAIVE_41
119.1
B_CELL_NAIVE_42
119.1
B_CELL_NAIVE_43
118.6
B_CELL_NAIVE_44
118.5
B_CELL_NAIVE_45
118.2
B_CELL_NAIVE_46
117.8
B_CELL_NAIVE_47
117.7
B_CELL_NAIVE_48
117.6
B_CELL_NAIVE_49
116.9
B_CELL_NAIVE_50
116.8
B_CELL_NAIVE_51
116.8
B_CELL_NAIVE_52
116.7
B_CELL_NAIVE_53
116.6
B_CELL_NAIVE_54
116.5
B_CELL_NAIVE_55
116.3
B_CELL_NAIVE_56
116.2
B_CELL_NAIVE_57
116.1
B_CELL_NAIVE_58
116.0
B_CELL_NAIVE_59
115.9
B_CELL_NAIVE_60
115.7
B_CELL_NAIVE_61
115.6
B_CELL_NAIVE_62
115.6
B_CELL_NAIVE_63
115.1
B_CELL_NAIVE_64
114.8
B_CELL_NAIVE_65
114.6
B_CELL_NAIVE_66
114.5
B_CELL_NAIVE_67
114.2
B_CELL_NAIVE_68
114.0
B_CELL_NAIVE_69
113.4
B_CELL_NAIVE_70
113.0
B_CELL_NAIVE_71
112.9
B_CELL_NAIVE_72
112.6
B_CELL_NAIVE_73
112.5
B_CELL_NAIVE_74
111.0
B_CELL_NAIVE_75
110.5
B_CELL_NAIVE_76
110.4
B_CELL_NAIVE_77
108.7
B_CELL_NAIVE_78
108.6
B_CELL_NAIVE_79
108.4
B_CELL_NAIVE_80
108.1
B_CELL_NAIVE_81
108.1
B_CELL_NAIVE_82
107.0
B_CELL_NAIVE_83
105.8
B_CELL_NAIVE_84
105.7
B_CELL_NAIVE_85
103.7
B_CELL_NAIVE_86
102.4
B_CELL_NAIVE_87
100.5
B_CELL_NAIVE_88
99.3
B_CELL_NAIVE_89
98.3
B_CELL_NAIVE_90
97.1
B_CELL_NAIVE_91
95.1
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