A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
163.9
nTPM
Monaco:
337.7
nTPM
Schmiedel:
170.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
163.9
HPA sample
nTPM
Classical monocyte nTPM: 112.9
Samples: 6
Max nTPM: 160.5
Min nTPM: 85.5
P10809_1003
160.5
P10809_1020
133.8
P10809_1039
102.4
P10809_1058
85.5
P10809_1080
94.8
P10809_1107
100.2
Intermediate monocyte nTPM: 155.9
Samples: 6
Max nTPM: 200.2
Min nTPM: 112.6
P10809_1004
140.3
P10809_1023
160.0
P10809_1042
172.7
P10809_1061
200.2
P10809_1081
112.6
P10809_1108
149.3
Non-classical monocyte nTPM: 163.9
Samples: 5
Max nTPM: 245.5
Min nTPM: 106.2
P10809_1005
162.5
P10809_1053
154.5
P10809_1072
245.5
P10809_1082
106.2
P10809_1109
150.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
337.7
Monaco sample
nTPM
Classical monocyte nTPM: 289.0
Samples: 4
Max nTPM: 412.9
Min nTPM: 231.5
RHH5313_R3680
231.5
RHH5221_R3593
412.9
RHH5250_R3622
271.2
RHH5279_R3651
240.3
Intermediate monocyte nTPM: 337.7
Samples: 4
Max nTPM: 398.7
Min nTPM: 272.4
RHH5314_R3681
272.4
RHH5222_R3594
398.7
RHH5251_R3623
358.7
RHH5280_R3652
321.0
Non-classical monocyte nTPM: 321.0
Samples: 4
Max nTPM: 365.6
Min nTPM: 290.4
RHH5315_R3682
290.4
RHH5223_R3595
365.6
RHH5252_R3624
335.6
RHH5281_R3653
292.2
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
170.4
Schmiedel sample id
TPM
Classical monocyte TPM: 126.9
Samples: 91
Max TPM: 159.9
Min TPM: 97.6
MONOCYTES_1
159.9
MONOCYTES_2
153.4
MONOCYTES_3
150.6
MONOCYTES_4
150.2
MONOCYTES_5
149.7
MONOCYTES_6
146.1
MONOCYTES_7
143.7
MONOCYTES_8
141.6
MONOCYTES_9
141.5
MONOCYTES_10
141.0
MONOCYTES_11
140.8
MONOCYTES_12
140.7
MONOCYTES_13
140.3
MONOCYTES_14
139.6
MONOCYTES_15
139.6
MONOCYTES_16
139.3
MONOCYTES_17
139.2
MONOCYTES_18
138.9
MONOCYTES_19
138.8
MONOCYTES_20
138.5
MONOCYTES_21
137.8
MONOCYTES_22
137.6
MONOCYTES_23
136.2
MONOCYTES_24
136.1
MONOCYTES_25
135.8
MONOCYTES_26
135.6
MONOCYTES_27
135.5
MONOCYTES_28
135.5
MONOCYTES_29
135.2
MONOCYTES_30
133.9
MONOCYTES_31
133.1
MONOCYTES_32
132.8
MONOCYTES_33
132.2
MONOCYTES_34
132.1
MONOCYTES_35
131.7
MONOCYTES_36
131.6
MONOCYTES_37
131.1
MONOCYTES_38
131.0
MONOCYTES_39
130.8
MONOCYTES_40
128.7
MONOCYTES_41
128.1
MONOCYTES_42
128.0
MONOCYTES_43
127.1
MONOCYTES_44
126.9
MONOCYTES_45
126.7
MONOCYTES_46
126.7
MONOCYTES_47
126.7
MONOCYTES_48
126.0
MONOCYTES_49
125.6
MONOCYTES_50
124.4
MONOCYTES_51
123.9
MONOCYTES_52
123.9
MONOCYTES_53
123.6
MONOCYTES_54
123.2
MONOCYTES_55
122.9
MONOCYTES_56
122.9
MONOCYTES_57
122.6
MONOCYTES_58
122.6
MONOCYTES_59
122.2
MONOCYTES_60
121.9
MONOCYTES_61
121.9
MONOCYTES_62
121.7
MONOCYTES_63
119.1
MONOCYTES_64
119.1
MONOCYTES_65
118.7
MONOCYTES_66
118.2
MONOCYTES_67
118.1
MONOCYTES_68
118.1
MONOCYTES_69
118.0
MONOCYTES_70
117.8
MONOCYTES_71
117.6
MONOCYTES_72
116.8
MONOCYTES_73
116.1
MONOCYTES_74
115.3
MONOCYTES_75
113.9
MONOCYTES_76
113.5
MONOCYTES_77
112.5
MONOCYTES_78
112.1
MONOCYTES_79
111.9
MONOCYTES_80
111.0
MONOCYTES_81
110.5
MONOCYTES_82
110.3
MONOCYTES_83
108.6
MONOCYTES_84
108.4
MONOCYTES_85
107.8
MONOCYTES_86
107.1
MONOCYTES_87
107.1
MONOCYTES_88
106.4
MONOCYTES_89
106.2
MONOCYTES_90
102.7
MONOCYTES_91
97.6
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Non-classical monocyte TPM: 170.4
Samples: 90
Max TPM: 222.6
Min TPM: 142.4
M2_1
222.6
M2_2
208.5
M2_3
200.2
M2_4
198.0
M2_5
195.5
M2_6
194.1
M2_7
193.9
M2_8
192.6
M2_9
192.1
M2_10
190.5
M2_11
188.9
M2_12
188.5
M2_13
188.3
M2_14
187.3
M2_15
185.6
M2_16
184.7
M2_17
183.8
M2_18
183.4
M2_19
182.9
M2_20
182.3
M2_21
180.1
M2_22
178.3
M2_23
177.6
M2_24
177.2
M2_25
176.3
M2_26
175.8
M2_27
175.3
M2_28
175.1
M2_29
174.4
M2_30
174.2
M2_31
174.1
M2_32
174.0
M2_33
173.9
M2_34
173.5
M2_35
172.8
M2_36
172.5
M2_37
172.3
M2_38
171.3
M2_39
171.0
M2_40
169.6
M2_41
169.6
M2_42
169.6
M2_43
169.5
M2_44
169.4
M2_45
169.1
M2_46
168.1
M2_47
167.8
M2_48
167.0
M2_49
166.5
M2_50
166.2
M2_51
166.2
M2_52
165.8
M2_53
165.7
M2_54
165.5
M2_55
165.2
M2_56
164.7
M2_57
163.7
M2_58
163.3
M2_59
163.2
M2_60
163.1
M2_61
163.1
M2_62
162.8
M2_63
161.9
M2_64
161.3
M2_65
161.0
M2_66
160.7
M2_67
160.6
M2_68
160.4
M2_69
160.2
M2_70
159.7
M2_71
159.6
M2_72
159.4
M2_73
159.2
M2_74
159.2
M2_75
158.3
M2_76
157.6
M2_77
156.3
M2_78
156.1
M2_79
155.2
M2_80
154.0
M2_81
153.7
M2_82
152.7
M2_83
152.0
M2_84
151.6
M2_85
149.6
M2_86
149.4
M2_87
148.5
M2_88
145.1
M2_89
144.3
M2_90
142.4
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