MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.9 nTPM
HPA Brain:93.6 nTPM
GTEx:6.9 nTPM
FANTOM5:235.7 Scaled Tags Per Million
Pig:37.0 nTPM
Mouse:3.9 nTPM
Allen mouse:0.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 68.3
1870 Female, age 42, unknown 99.8
1830 Male, age 51, unknown 96.9
2019 Male, age 18, unknown 91.3
1833 Male, age 53, unknown 74.4
2411 Female, age 72, unknown 72.8
2828 Female, age 72, unknown 61.6
2586 Male, age 75, left hemisphere 52.0
1827 Male, age 72, unknown 45.8
2219 Male, age 76, both hemispheres 44.3
2666 Male, age 74, left hemisphere 43.7
Dorsal raphe nucleus
nTPM: 68.8
2750 Male, age 76, both hemispheres 133.1
2016 Female, age 72, unknown 68.5
1828 Male, age 53, unknown 53.0
2298 Female, age 72, unknown 49.8
2047 Male, age 72, unknown 39.5
Inferior colliculus
nTPM: 50.8
2849 Male, age 72, unknown 57.0
1848 Female, age 42, unknown 56.8
1890 Male, age 53, unknown 46.6
2097 Female, age 72, unknown 43.0
Median raphe nucleus
nTPM: 78.5
2220 Male, age 76, midline 78.5
Periaquaductal grey, anterior
nTPM: 54.0
2502 Female, age 75, unknown 79.4
1947 Male, age 18, unknown 41.4
1795 Male, age 51, unknown 41.1
Periaquaductal grey, dorsal
nTPM: 58.8
2850 Male, age 76, both hemispheres 72.5
1831 Male, age 72, unknown 65.7
2464 Female, age 72, unknown 54.9
1840 Male, age 53, unknown 42.1
Periaquaductal grey, lateral
nTPM: 66.7
2140 Male, age 76, both hemispheres 73.4
2272 Male, age 74, both hemispheres 67.6
2053 Male, age 18, unknown 59.1
Pretectal area
nTPM: 53.4
2273 Male, age 74, both hemispheres 91.7
2316 Male, age 76, right hemisphere 77.8
2407 Male, age 75, both hemispheres 63.8
2825 Male, age 18, unknown 57.0
1815 Male, age 53, unknown 53.9
2224 Female, age 72, unknown 45.3
2007 Male, age 72, unknown 44.0
1817 Female, age 42, unknown 42.9
2667 Female, age 75, unknown 41.8
1944 Female, age 72, unknown 38.9
1816 Male, age 51, unknown 29.8
Red nucleus
nTPM: 93.6
1865 Male, age 51, unknown 126.9
2823 Male, age 76, right hemisphere 118.1
2227 Male, age 72, unknown 107.1
2769 Male, age 72, unknown 106.4
1821 Female, age 72, unknown 100.5
1904 Male, age 53, unknown 94.8
2785 Male, age 18, unknown 94.1
2725 Female, age 75, unknown 90.7
1954 Female, age 42, unknown 85.8
2503 Female, age 72, unknown 69.5
2584 Male, age 75, left hemisphere 65.9
2588 Male, age 74, left hemisphere 63.7
Substantia nigra
nTPM: 61.5
1941 Male, age 53, unknown 92.6
2590 Female, age 75, unknown 76.4
2699 Male, age 18, unknown 68.4
1851 Male, age 51, unknown 67.8
2583 Male, age 75, right hemisphere 60.2
2241 Male, age 72, unknown 58.0
1889 Female, age 72, unknown 56.5
2665 Male, age 74, both hemispheres 48.2
2409 Female, age 72, unknown 44.3
1916 Female, age 42, unknown 42.7
Superior colliculus
nTPM: 65.2
1913 Female, age 42, unknown 107.4
1995 Male, age 72, unknown 94.8
2587 Male, age 74, left hemisphere 78.5
2664 Male, age 75, both hemispheres 64.9
1839 Male, age 51, unknown 64.4
1895 Male, age 76, right hemisphere 58.0
1796 Male, age 53, unknown 50.3
2087 Female, age 72, unknown 48.2
2261 Male, age 18, unknown 46.8
2668 Female, age 75, unknown 38.6
Ventral tegmental area
nTPM: 80.4
2223 Female, age 72, unknown 124.4
2021 Male, age 53, unknown 86.5
2218 Male, age 76, both hemispheres 81.3
1942 Male, age 51, unknown 67.8
2410 Female, age 72, unknown 65.6
1915 Female, age 42, unknown 57.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.9
Samples: 183

Max nTPM: 50.4
Min nTPM: 0.0
Std nTPM: 7.9
Median nTPM: 4.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 50.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 46.2
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 42.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.4
GTEX-1JJ6O-0011-R2a-SM-EY5ZO 60-69 years, male 26.1
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 25.3
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 24.6
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 23.8
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 21.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 21.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 20.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 235.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 235.7
FF:10158-103A5 76 years, female 235.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.0
Samples: 4

Max nTPM: 78.5
Min nTPM: 17.8
Sample A Female 26.9
Sample B Female 78.5
Sample C Male 17.8
Sample D Male 24.9
Midbrain
nTPM: 25.1
Samples: 4

Max nTPM: 50.9
Min nTPM: 8.5
Sample A Female 50.9
Sample B Female 15.7
Sample C Male 25.4
Sample D Male 8.5
Periaqueductal gray
nTPM: 18.0
Samples: 3

Max nTPM: 18.4
Min nTPM: 17.5
Sample B Female 18.2
Sample C Male 17.5
Sample D Male 18.4
Superior colliculi
nTPM: 21.6
Samples: 4

Max nTPM: 24.2
Min nTPM: 18.3
Sample A Female 20.4
Sample B Female 23.5
Sample C Male 18.3
Sample D Male 24.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.9
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.5
Sample A Male 4.4
Sample B Male 3.5
Sample C Female 3.7
Sample D Female 4.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68668000 Antisense, RP_050203_01_C02, Mouse strain C57BL/6J (56 days, male) 0.9
74819252 Antisense, RP_060315_02_D04, Mouse strain C57BL/6J (56 days, male) 0.8

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