MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA Brain:45.6 nTPM
GTEx:21.6 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:180.0 nTPM
Allen mouse:13.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.0
2219 Male, age 76, both hemispheres 43.5
2411 Female, age 72, unknown 40.3
2019 Male, age 18, unknown 39.6
1827 Male, age 72, unknown 36.3
2666 Male, age 74, left hemisphere 35.9
2586 Male, age 75, left hemisphere 35.0
1870 Female, age 42, unknown 33.8
1833 Male, age 53, unknown 31.4
1830 Male, age 51, unknown 27.9
2828 Female, age 72, unknown 26.6
Dorsal raphe nucleus
nTPM: 37.5
2298 Female, age 72, unknown 46.1
2750 Male, age 76, both hemispheres 40.9
1828 Male, age 53, unknown 37.8
2047 Male, age 72, unknown 37.7
2016 Female, age 72, unknown 25.0
Inferior colliculus
nTPM: 32.8
2097 Female, age 72, unknown 40.2
1848 Female, age 42, unknown 33.0
2849 Male, age 72, unknown 29.3
1890 Male, age 53, unknown 28.5
Median raphe nucleus
nTPM: 44.8
2220 Male, age 76, midline 44.8
Periaquaductal grey, anterior
nTPM: 39.6
2502 Female, age 75, unknown 42.2
1947 Male, age 18, unknown 40.7
1795 Male, age 51, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 32.3
1840 Male, age 53, unknown 38.0
1831 Male, age 72, unknown 31.9
2464 Female, age 72, unknown 31.2
2850 Male, age 76, both hemispheres 28.0
Periaquaductal grey, lateral
nTPM: 26.7
2053 Male, age 18, unknown 28.3
2272 Male, age 74, both hemispheres 26.3
2140 Male, age 76, both hemispheres 25.5
Pretectal area
nTPM: 39.3
1816 Male, age 51, unknown 55.4
1944 Female, age 72, unknown 54.0
2007 Male, age 72, unknown 51.2
1817 Female, age 42, unknown 47.5
1815 Male, age 53, unknown 44.0
2224 Female, age 72, unknown 37.0
2667 Female, age 75, unknown 33.6
2825 Male, age 18, unknown 31.0
2407 Male, age 75, both hemispheres 26.8
2273 Male, age 74, both hemispheres 26.7
2316 Male, age 76, right hemisphere 24.9
Red nucleus
nTPM: 30.0
1821 Female, age 72, unknown 37.7
2725 Female, age 75, unknown 34.7
2785 Male, age 18, unknown 34.6
2588 Male, age 74, left hemisphere 33.3
2584 Male, age 75, left hemisphere 33.0
1954 Female, age 42, unknown 28.4
1904 Male, age 53, unknown 27.2
2503 Female, age 72, unknown 27.0
2227 Male, age 72, unknown 26.4
2769 Male, age 72, unknown 26.3
2823 Male, age 76, right hemisphere 25.8
1865 Male, age 51, unknown 25.7
Substantia nigra
nTPM: 45.6
1941 Male, age 53, unknown 58.3
2241 Male, age 72, unknown 57.1
1851 Male, age 51, unknown 53.8
1916 Female, age 42, unknown 52.5
2409 Female, age 72, unknown 48.8
1889 Female, age 72, unknown 47.4
2665 Male, age 74, both hemispheres 39.2
2699 Male, age 18, unknown 34.1
2583 Male, age 75, right hemisphere 32.3
2590 Female, age 75, unknown 32.0
Superior colliculus
nTPM: 35.3
2668 Female, age 75, unknown 43.7
2087 Female, age 72, unknown 42.3
1895 Male, age 76, right hemisphere 39.3
2261 Male, age 18, unknown 38.2
1796 Male, age 53, unknown 37.0
2587 Male, age 74, left hemisphere 35.0
1839 Male, age 51, unknown 33.2
1913 Female, age 42, unknown 29.7
2664 Male, age 75, both hemispheres 27.9
1995 Male, age 72, unknown 26.3
Ventral tegmental area
nTPM: 41.3
2218 Male, age 76, both hemispheres 54.6
2410 Female, age 72, unknown 52.5
1915 Female, age 42, unknown 41.7
1942 Male, age 51, unknown 37.3
2223 Female, age 72, unknown 34.0
2021 Male, age 53, unknown 27.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 21.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.6
Samples: 183

Max nTPM: 90.2
Min nTPM: 8.4
Std nTPM: 12.4
Median nTPM: 18.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 90.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 76.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 57.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 57.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 55.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 52.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 50.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 47.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 46.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 45.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.6
FF:10158-103A5 76 years, female 35.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 44.7
Samples: 4

Max nTPM: 63.8
Min nTPM: 23.4
Sample A Female 63.8
Sample B Female 31.1
Sample C Male 60.5
Sample D Male 23.4
Midbrain
nTPM: 45.9
Samples: 4

Max nTPM: 64.4
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 37.5
Sample C Male 64.4
Sample D Male 56.7
Periaqueductal gray
nTPM: 39.6
Samples: 3

Max nTPM: 49.2
Min nTPM: 34.7
Sample B Female 34.7
Sample C Male 49.2
Sample D Male 34.9
Superior colliculi
nTPM: 45.5
Samples: 4

Max nTPM: 60.2
Min nTPM: 22.3
Sample A Female 50.7
Sample B Female 22.3
Sample C Male 60.2
Sample D Male 48.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 180.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 180.0
Samples: 4

Max nTPM: 192.2
Min nTPM: 160.0
Sample A Male 160.0
Sample B Male 183.7
Sample C Female 192.2
Sample D Female 184.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 13.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.1
227736 Antisense, RP_040609_01_C06, Mouse strain C57BL/6J (56 days, male) 13.1
276073 Antisense, RP_040609_01_C06, Mouse strain C57BL/6J (56 days, male) 12.8

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