On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
19.6
nTPM
HPA Brain:
34.3
nTPM
GTEx:
19.6
nTPM
FANTOM5:
24.6
Scaled Tags Per Million
Macaque:
23.4
nTPM
Mouse:
18.0
nTPM
Rat:
26.6
nTPM
Pig:
28.6
nTPM
SPINAL CORD - SINGLE NUCLEI RNA EXPRESSIONi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
SINGLE NUCLEI BRAIN - SPINAL CORD, NEURONSi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Excitatory (VGLUT1) ETV1+ Z...
c-2
Excitatory (VGLUT2) SST+ GR...
c-3
Excitatory (VGLUT2)
c-4
Excitatory (VGLUT2) SST+ CX...
c-5
Excitatory (VGLUT2) SST+ TA...
c-6
Excitatory (VGLUT2) SST+ CA...
c-7
Excitatory (VGLUT2) SST+
c-8
Excitatory (VGLUT2) CXCL14+
c-9
Excitatory (VGLUT2) SST+
c-10
Inhibitory (GAD1/2) SLC6A5+...
c-11
Inhibitory (GAD1/2) PENK+ E...
c-12
Inhibitory (GAD1/2) SLC6A5+...
c-13
Excitatory (VGLUT2)
c-14
Excitatory (VGLUT2) CALB1+
c-15
Inhibitory (GAD1/2) SLC6A5+...
c-16
CALB1+ TRH+
c-17
Inhibitory (GAD1/2) SLC6A5+
c-18
Inhibitory (GAD1/2) SLC6A5+...
c-19
Inhibitory (GAD1/2) SLC6A5+...
c-20
Excitatory (VGLUT2) PENK+ T...
c-21
Inhibitory (GAD2) SLC6A5+ N
c-22
Inhibitory (GAD1/2) TAC1+ K...
c-23
Inhibitory (GAD1/2) SLC6A5+...
c-24
Excitatory (VGLUT2) TAC1+
c-25
Excitatory (VGLUT2)
c-26
Inhibitory (GAD1/2) SLC6A5+
c-27
Excitatory (VGLUT2) SST+ CA...
c-28
Inhibitory (GAD1/2) SLC6A5+...
c-29
Unassigned
c-30
Excitatory (VGLUT2) PENK+
c-31
Inhibitory (GAD1/2) PVALB+ ...
c-32
Excitatory (VGLUT2) PENK+ S...
c-33
Excitatory (VGLUT2)
c-34
Excitatory (VGLUT2) SST+ TA...
c-35
Excitatory (VGLUT2)
Show allShow less
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SINGLE NUCLEI BRAIN - SPINAL CORD, NON-NEURONALi
RNA expression in the single nuclei cluster types identified in this brain region visualized by a UMAP plot (top) and a bar chart (to the right).
- UMAP PLOT visualizes the cells in each cluster; where each dot corresponds to a cell. For each individual cell, mouseover reveals read count and which cluster the cell belongs to. Hovering over a cluster name will highlight the corresponding cluster in the bar chart two the right. There are 2 options for color schemes: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster. There are 3 options for cell intensities: 1) Intensity, which color the individual cells according to % of max (log2(read_count+1)/log2(max(read_count)+1)*100) in five different bins (<1%,<25%,<50%,<75%,≥75%) 2) Interval, which color the individual cells according to fixed interval of read count (0,1,2-4,5-9,>10) 3) Hexagon, which color the hexagon on average read count of all cells inside the hexagon
- The BAR CHART shows RNA expression (nTPM) in each cluster type. Hovering over the cluster name reveals nTPM value and number of included cells. Hovering over a bar highlights the corresponding cluster in the UMAP plot above. Color-coding can be toggled on the top of the page, between 2 options: 1) cell type color, which is based on cell type groups used in the Single cell type part of the Single cell resource and 2) cluster color, which assigns a unique color to each cluster.
Cell type color
Cluster color
Colored according to cell type group
Colored according to clusters
Read count filter:0
Cluster
Cell type
Expression (nCPM)
c-1
Oligodendrocytes
c-2
Oligodendrocytes
c-3
Oligodendrocytes
c-4
Oligodendrocytes
c-5
Oligodendrocyte progenitor ...
c-6
Oligodendrocytes
c-7
Microglia
c-8
Astrocytes (CD44+)
c-9
Astrocytes (CD44+)
c-10
Astrocytes
c-11
Lymphocytes
c-12
Vascular endothelial cells
c-13
Microglia (SPP1+ HIF1A+)
c-14
Ependymal cells
c-15
Oligodendrocyte & OPC doubl
c-16
Pericytes
c-17
Fibroblasts
c-18
Immature oligodendrocytes
c-19
Macrophages
c-20
Myelinating schwann cells
This data was generated by Siletti K et al. (2023), re-processed by HPA (see methods) and simplified for global overview
SPINAL CORD - PROTEINTALKS DB MS
Median intensity
ND
Sample
Intensity
Spinal cord_01
ND
Spinal cord_02
ND
Spinal cord_03
ND
Spinal cord_04
ND
Spinal cord_05
ND
Spinal cord_06
ND
Spinal cord_07
ND
Spinal cord_08
ND
SPINAL CORD - HPA Brain Stereo-seq
SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
34.3
Sample id
Sample description
nTPM
Anterior funiculus (white matter) nTPM: 26.5
2734
Male, age 80, both hemispheres
27.1
2818
Female, age 79, both hemispheres
27.0
2819
Male, age 47, both hemispheres
26.7
2193
Male, age 75, both hemispheres
25.2
Cervical spinal cord, central gray nTPM: 25.1
2565
Male, age 75, midline
32.0
2816
Male, age 47, midline
24.6
2194
Female, age 79, both hemispheres
24.2
1981
Female, age 72, midline
23.4
2048
Male, age 55, midline
21.3
Cervical spinal cord, dorsal horn nTPM: 23.0
2173
Female, age 72, unknown
25.8
2296
Male, age 66, both hemispheres
25.0
1877
Male, age 55, unknown
24.8
2069
Male, age 47, both hemispheres
21.8
2297
Male, age 75, both hemispheres
21.7
2721
Male, age 90, both hemispheres
19.1
Cervical spinal cord, ventral horn nTPM: 34.3
2480
Male, age 75, both hemispheres
53.8
2809
Male, age 90, both hemispheres
39.6
2295
Male, age 66, both hemispheres
34.6
2820
Female, age 79, both hemispheres
30.4
2068
Male, age 55, unknown
26.5
2098
Female, age 72, unknown
21.1
Dorsal funiculus (white matter) nTPM: 25.6
2817
Male, age 47, both hemispheres
26.9
2810
Male, age 90, both hemispheres
26.0
2064
Female, age 79, both hemispheres
25.7
2128
Male, age 75, both hemispheres
24.9
2812
Male, age 66, both hemispheres
24.5
Lateral funiculus (white matter) nTPM: 24.8
2094
Female, age 79, both hemispheres
27.8
2192
Male, age 75, both hemispheres
24.6
2099
Male, age 90, both hemispheres
24.3
2294
Male, age 66, both hemispheres
22.5
SPINAL CORD - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
19.6
GTEx sample id
Sample description
nTPM
Brain - Spinal cord (cervical c-1) Average nTPM: 19.6
Samples: 204
Max nTPM: 45.8
Min nTPM: 6.1
Std nTPM: 5.9
Median nTPM: 19.0
GTEX-1JN6P-0011-R9a-SM-G8LM9
60-69 years, male
45.8
GTEX-1HGF4-0011-R9a-SM-ADEH9
60-69 years, male
42.8
GTEX-111VG-0011-R9b-SM-GHWOB
60-69 years, male
37.9
GTEX-1A8G6-0011-R9a-SM-GOQZR
60-69 years, male
35.1
GTEX-11GSO-0011-R9b-SM-GI4VN
60-69 years, male
33.5
GTEX-1I1GV-0011-R9b-SM-ARZLE
60-69 years, male
32.6
GTEX-11NUK-0011-R9a-SM-GI4XG
50-59 years, male
31.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1
50-59 years, female
31.3
GTEX-1CAV2-0011-R9b-SM-9WG5M
40-49 years, female
31.2
GTEX-1GF9W-0011-R9b-SM-9WG7J
60-69 years, male
31.1
GTEX-1QP6S-0011-R9a-SM-G8LMO
40-49 years, male
31.0
GTEX-13NYB-0011-R9b-SM-5MR5P
40-49 years, male
30.6
GTEX-148VJ-0011-R9b-SM-5SI77
70-79 years, male
30.5
GTEX-11DXW-0011-R9a-SM-GHWOE
40-49 years, male
29.7
GTEX-XLM4-0011-R9A-SM-4AT45
60-69 years, male
29.3
GTEX-1GN2E-0011-R9b-SM-9WG7F
60-69 years, male
28.6
GTEX-1C6VQ-0011-R9a-SM-7SB85
50-59 years, male
28.4
GTEX-1PPGY-0011-R9a-SM-G8LMR
60-69 years, male
27.9
GTEX-13O1R-0011-R9b-SM-5KM33
60-69 years, male
27.1
GTEX-17EVQ-0011-R9b-SM-79OJY
70-79 years, male
27.0
GTEX-139UW-0011-R9b-SM-5LZYT
60-69 years, male
26.8
GTEX-T6MN-0011-R9A-SM-32QOZ
50-59 years, male
26.8
GTEX-11ZVC-0011-R9a-SM-57WC5
50-59 years, female
26.4
GTEX-1H1DF-0011-R9b-SM-CM2RN
40-49 years, female
26.3
GTEX-WVLH-0011-R9A-SM-H7OHH
50-59 years, male
26.1
GTEX-YJ89-0011-R9a-SM-4SOK7
60-69 years, male
25.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A
40-49 years, male
25.5
GTEX-1H1DG-0011-R9b-SM-ACKVB
70-79 years, male
25.5
GTEX-1N5O9-0011-R9a-SM-G8LLD
60-69 years, male
25.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU
40-49 years, male
25.0
GTEX-13PLJ-0011-R9b-SM-5O9DV
60-69 years, female
24.9
GTEX-1R9PO-0011-R9a-SM-G8LKP
60-69 years, female
24.9
GTEX-13N1W-0011-R9b-SM-5MR4R
70-79 years, male
24.7
GTEX-1JMQL-0011-R9b-SM-G8LLH
50-59 years, female
24.7
GTEX-11ZTS-0011-R9b-SM-DO93Q
60-69 years, female
24.4
GTEX-1J8EW-0011-R9b-SM-D4P2F
60-69 years, female
24.4
GTEX-145LU-0011-R9b-SM-5SI66
50-59 years, male
24.2
GTEX-1I1CD-0011-R9a-SM-CMKHB
60-69 years, female
24.2
GTEX-1GTWX-0011-R9a-SM-ADEH4
60-69 years, male
24.1
GTEX-WL46-0011-R9A-SM-3MJFP
50-59 years, male
24.1
GTEX-13PVQ-0011-R9b-SM-5LU3B
50-59 years, male
24.0
GTEX-13OVL-0011-R9a-SM-5P9GX
50-59 years, male
23.8
GTEX-1IGQW-0011-R9b-SM-D4P25
60-69 years, male
23.7
GTEX-13PL6-0011-R9b-SM-5O9CH
40-49 years, female
23.6
GTEX-13JUV-0011-R9a-SM-5LZX3
40-49 years, female
23.5
GTEX-1GZHY-0011-R9a-SM-9WG5R
50-59 years, female
23.4
GTEX-1KANB-0011-R9b-SM-EZ6MO
50-59 years, male
23.2
GTEX-16Z82-0011-R9a-SM-7DUFA
60-69 years, male
23.1
GTEX-1RAZS-0011-R9b-SM-G8OMS
50-59 years, male
23.1
GTEX-13S7M-0011-R9a-SM-5O9DW
60-69 years, female
22.9
GTEX-14BIN-0011-R9a-SM-5SI76
50-59 years, female
22.8
GTEX-14PJM-0011-R9b-SM-6EU35
50-59 years, female
22.6
GTEX-1RDX4-0011-R9b-SM-G8LMG
50-59 years, female
22.6
GTEX-117YW-0011-R9a-SM-GHWPQ
50-59 years, male
22.5
GTEX-13VXU-0011-R9b-SM-5SI73
50-59 years, male
22.5
GTEX-1F88F-0011-R9b-SM-9WG7L
60-69 years, female
22.4
GTEX-NL4W-0011-R9a-SM-2I3G1
50-59 years, male
22.4
GTEX-13FTY-0011-R9b-SM-5KM2U
40-49 years, female
22.2
GTEX-11ZUS-0011-R9b-SM-5BC76
30-39 years, male
21.7
GTEX-12584-0011-R9b-SM-GI4WC
40-49 years, male
21.7
GTEX-1EU9M-0011-R9a-SM-9WG61
60-69 years, male
21.7
GTEX-1C6VS-0011-R9b-SM-9WG5W
60-69 years, male
21.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z
40-49 years, male
21.6
GTEX-12126-0011-R9b-SM-5BC6P
20-29 years, male
21.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L
70-79 years, female
21.5
GTEX-1F6I4-0011-R9a-SM-CMKFU
60-69 years, male
21.5
GTEX-1QMI2-0011-R9a-SM-G8ON7
60-69 years, male
21.5
GTEX-13112-0011-R9b-SM-GHWOV
50-59 years, male
21.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF
60-69 years, female
21.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH
30-39 years, male
21.4
GTEX-1LSNL-0011-R9b-SM-EYYWK
50-59 years, male
21.4
GTEX-13QJC-0011-R9b-SM-5PNX3
60-69 years, female
21.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8
50-59 years, male
21.1
GTEX-1JMLX-0011-R9a-SM-EYYXM
50-59 years, male
21.1
GTEX-11EMC-0011-R9b-SM-DO921
60-69 years, female
21.0
GTEX-117XS-0011-R9b-SM-GHWOG
60-69 years, male
20.9
GTEX-131XW-0011-R9a-SM-5N9EO
50-59 years, female
20.8
GTEX-13X6I-0011-R9b-SM-5PNZJ
60-69 years, male
20.6
GTEX-1CB4H-0011-R9a-SM-CKZNL
60-69 years, female
20.6
GTEX-11NV4-0011-R9a-SM-GHWPP
60-69 years, male
20.5
GTEX-1A32A-0011-R9b-SM-7MGXD
50-59 years, female
20.5
GTEX-ZV68-0011-R9b-SM-GNTB9
50-59 years, female
20.5
GTEX-1F52S-0011-R9a-SM-9WG62
60-69 years, female
20.3
GTEX-14BIM-0011-R9a-SM-6LLJL
60-69 years, female
20.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH
60-69 years, male
20.2
GTEX-1HR98-0011-R9b-SM-ARL79
60-69 years, male
20.1
GTEX-11ONC-0011-R9b-SM-5NQ8J
60-69 years, male
19.9
GTEX-16GPK-0011-R9a-SM-GPI9P
60-69 years, male
19.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7
60-69 years, male
19.8
GTEX-1I19N-0011-R9a-SM-CMKHN
70-79 years, male
19.8
GTEX-ZAJG-0011-R9a-SM-GNTAY
50-59 years, female
19.8
GTEX-14E6C-0011-R9a-SM-6EU33
40-49 years, male
19.7
GTEX-11WQK-0011-R9b-SM-5BC6N
50-59 years, male
19.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN
50-59 years, male
19.6
GTEX-113JC-0011-R9a-SM-H6Q8K
50-59 years, female
19.5
GTEX-11ZU8-0011-R9b-SM-GHWOL
60-69 years, male
19.4
GTEX-13CIG-0011-R9a-SM-5K7VU
50-59 years, male
19.3
GTEX-13NZA-0011-R9b-SM-5MR5I
60-69 years, male
19.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY
60-69 years, male
19.3
GTEX-16XZZ-0011-R9b-SM-7DHKX
60-69 years, male
19.2
GTEX-11GSP-0011-R9b-SM-5NQ77
60-69 years, female
19.1
GTEX-12WSC-0011-R9a-SM-5GU4U
50-59 years, male
19.0
GTEX-13SLW-0011-R9a-SM-5O9BT
70-79 years, male
19.0
GTEX-14ABY-0011-R9a-SM-5PNZK
50-59 years, male
19.0
GTEX-1192X-0011-R9b-SM-DO934
50-59 years, male
18.8
GTEX-1B8L1-0011-R9b-SM-9WG5U
60-69 years, male
18.8
GTEX-1IL2U-0011-R9a-SM-GPRYC
60-69 years, male
18.7
GTEX-1O9I2-0011-R9b-SM-G8OKW
50-59 years, male
18.7
GTEX-1HBPH-0011-R9a-SM-CMKH3
40-49 years, female
18.6
GTEX-13FXS-0011-R9a-SM-5K7UI
50-59 years, male
18.5
GTEX-15EO6-0011-R9a-SM-6PALG
50-59 years, male
18.3
GTEX-14E7W-0011-R9a-SM-62LE6
70-79 years, male
18.2
GTEX-1GF9V-0011-R9a-SM-CL53K
60-69 years, male
18.2
GTEX-13G51-0011-R9b-SM-GHWPS
60-69 years, male
18.1
GTEX-14BMV-0011-R9b-SM-5ZZUA
50-59 years, male
18.1
GTEX-1HBPM-0011-R9b-SM-ARL7C
60-69 years, female
18.1
GTEX-15ER7-0011-R9b-SM-6PALF
20-29 years, female
17.9
GTEX-131YS-0011-R9b-SM-5EQLY
60-69 years, female
17.7
GTEX-1HFI6-0011-R9b-SM-CMKH4
40-49 years, male
17.7
GTEX-1LG7Y-0011-R9a-SM-G8LMA
50-59 years, male
17.7
GTEX-XMD1-0011-R9A-SM-4AT49
60-69 years, male
17.7
GTEX-16NPV-0011-R9b-SM-79ONF
50-59 years, female
17.6
GTEX-1PIIG-0011-R9b-SM-G8OLU
30-39 years, male
17.6
GTEX-ZF28-0011-R9a-SM-4WWDY
60-69 years, male
17.6
GTEX-1A8G7-0011-R9b-SM-7IGQH
60-69 years, male
17.5
GTEX-1HBPI-0011-R9b-SM-ARL76
50-59 years, male
17.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ
70-79 years, male
17.3
GTEX-1LSVX-0011-R9b-SM-G8LL2
60-69 years, male
17.3
GTEX-147GR-0011-R9a-SM-5S2UY
60-69 years, male
17.2
GTEX-1212Z-0011-R9b-SM-GHWPM
60-69 years, male
17.1
GTEX-QDT8-0011-R9A-SM-CYPRD
30-39 years, female
17.1
GTEX-TSE9-0011-R9A-SM-3DB7Q
60-69 years, female
17.1
GTEX-139T4-0011-R9b-SM-5HL6S
50-59 years, female
17.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM
60-69 years, male
17.0
GTEX-15UF6-0011-R9b-SM-GOQZG
70-79 years, female
16.8
GTEX-ZVZQ-0011-R9a-SM-51MRH
60-69 years, female
16.8
GTEX-1B933-0011-R9a-SM-79OOR
50-59 years, female
16.6
GTEX-1GN1U-0011-R9b-SM-CMKFW
50-59 years, female
16.6
GTEX-1H23P-0011-R9a-SM-CM2T1
60-69 years, male
16.6
GTEX-1I1GS-0011-R9b-SM-CMKHF
60-69 years, male
16.5
GTEX-1J1OQ-0011-R9b-SM-GRR22
40-49 years, female
16.5
GTEX-NPJ7-0011-R9a-SM-G8W5X
60-69 years, female
16.5
GTEX-13FLV-0011-R9b-SM-5L3DA
50-59 years, male
16.4
GTEX-12WSI-0011-R9b-SM-GHWOU
50-59 years, male
16.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3
60-69 years, male
16.1
GTEX-1IDJH-0011-R9a-SM-ADEIN
70-79 years, male
16.0
GTEX-15DYW-0011-R9b-SM-6PALB
60-69 years, female
15.9
GTEX-1NV8Z-0011-R9b-SM-G8OME
60-69 years, male
15.7
GTEX-12WSH-0011-R9b-SM-5LZUG
50-59 years, male
15.6
GTEX-14JFF-0011-R9b-SM-G9ERJ
60-69 years, male
15.6
GTEX-OHPN-0011-R9A-SM-5TDEJ
60-69 years, female
15.6
GTEX-14JIY-0011-R9a-SM-6EU34
60-69 years, male
15.5
GTEX-15G19-0011-R9b-SM-7KUEE
60-69 years, male
15.5
GTEX-1EH9U-0011-R9b-SM-9WG5T
60-69 years, male
15.5
GTEX-1EKGG-0011-R9a-SM-CMKFV
60-69 years, male
15.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ
60-69 years, male
15.4
GTEX-ZZPT-0011-R9a-SM-GOQYS
50-59 years, male
15.4
GTEX-13CZV-0011-R9a-SM-5LZXT
60-69 years, male
15.3
GTEX-14BIL-0011-R9a-SM-5SI7A
50-59 years, male
15.2
GTEX-1POEN-0011-R9b-SM-G8LL1
30-39 years, female
15.1
GTEX-T5JC-0011-R9A-SM-32PLV
20-29 years, male
15.1
GTEX-13QIC-0011-R9a-SM-GI4WO
60-69 years, female
15.0
GTEX-14PJO-0011-R9b-SM-62LE9
60-69 years, male
14.9
GTEX-11UD2-0011-R9b-SM-DO926
50-59 years, male
14.8
GTEX-15SHU-0011-R9a-SM-GNIOE
40-49 years, female
14.8
GTEX-OXRO-0011-R9A-SM-3NB1X
60-69 years, female
14.7
GTEX-1I1HK-0011-R9a-SM-CMKHK
60-69 years, male
14.6
GTEX-YFC4-0011-R9a-SM-4SOK4
40-49 years, female
14.6
GTEX-11DZ1-0011-R9a-SM-DO933
50-59 years, male
14.5
GTEX-1IY9M-0011-R9b-SM-D3L8J
60-69 years, male
14.5
GTEX-13SLX-0011-R9b-SM-5SI6X
50-59 years, female
14.3
GTEX-12WSD-0011-R9a-SM-5GU6W
60-69 years, female
14.2
GTEX-15DCD-0011-R9b-SM-7KUED
70-79 years, female
14.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ
50-59 years, male
14.2
GTEX-1269C-0011-R9b-SM-GI4WM
60-69 years, female
14.0
GTEX-13N2G-0011-R9b-SM-5MR4E
60-69 years, male
13.9
GTEX-14PN4-0011-R9a-SM-6LLH9
50-59 years, male
13.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP
50-59 years, male
13.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO
70-79 years, male
13.4
GTEX-1LVA9-0011-R9a-SM-EYYWF
50-59 years, male
13.2
GTEX-QVJO-0011-R9A-SM-2S1QH
60-69 years, female
13.1
GTEX-1LKK1-0011-R9a-SM-G8OLY
50-59 years, female
13.0
GTEX-ZE9C-0011-R9a-SM-4WWCY
60-69 years, male
12.8
GTEX-1R46S-0011-R9a-SM-EZ6N7
60-69 years, female
12.7
GTEX-1PWST-0011-R9a-SM-G8OMQ
70-79 years, male
12.2
GTEX-PWO3-0011-R9A-SM-EVR2V
60-69 years, female
12.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI
60-69 years, male
12.0
GTEX-15CHQ-0011-R9a-SM-6LLHX
60-69 years, male
11.9
GTEX-1HSMO-0011-R9b-SM-CM2T2
60-69 years, male
11.9
GTEX-13OVJ-0011-R9b-SM-5L3GD
50-59 years, female
11.8
GTEX-1GN73-0011-R9a-SM-CKZO5
60-69 years, male
11.7
GTEX-12696-0011-R9a-SM-GHWPX
60-69 years, male
11.5
GTEX-13OW5-0011-R9b-SM-5O9CL
60-69 years, male
11.4
GTEX-ZAB4-0011-R9a-SM-4SOKG
40-49 years, male
11.3
GTEX-1JMOU-0011-R9b-SM-EY5YI
60-69 years, female
11.2
GTEX-1H2FU-0011-R9b-SM-CE6S4
60-69 years, female
10.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR
60-69 years, female
10.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY
60-69 years, male
10.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E
60-69 years, male
10.6
GTEX-13NYS-0011-R9b-SM-5MR44
60-69 years, male
10.2
GTEX-15DDE-0011-R9b-SM-6M46U
50-59 years, female
9.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP
60-69 years, male
9.5
GTEX-1LH75-0011-R9b-SM-EY5Y9
50-59 years, female
9.4
GTEX-X4EP-0011-R9B-SM-4QASI
60-69 years, female
6.1
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SPINAL CORD - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.4
Macaque sample
Sample description
nTPM
Dorsal spinal cord nTPM: 19.8
Samples: 2
Max nTPM: 25.4
Min nTPM: 14.1
Sample A
14.1
Sample B
25.4
Ventral spinal cord nTPM: 23.4
Samples: 1
Max nTPM: 23.4
Min nTPM: 23.4
Sample A
23.4
SPINAL CORD - Pig RNA-seqi
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
28.6
Pig sample
Sample description
nTPM
Dorsal spinal cord nTPM: 25.0
Samples: 4
Max nTPM: 28.6
Min nTPM: 19.3
Sample A
Female
27.8
Sample B
Female
24.2
Sample C
Male
19.3
Sample D
Male
28.6
Ventral spinal cord nTPM: 28.6
Samples: 4
Max nTPM: 32.9
Min nTPM: 24.7
Sample A
Female
27.4
Sample B
Female
32.9
Sample C
Male
24.7
Sample D
Male
29.5
SPINAL CORD - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
18.0
Mouse sample
Sample description
nTPM
Spinal cord nTPM: 18.0
Samples: 4
Max nTPM: 19.4
Min nTPM: 16.4
Sample A
16.4
Sample B
19.4
Sample C
18.1
Sample D
17.9
SPINAL CORD - Rat RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
26.6
Rat sample
Sample description
nTPM
Ventral spinal cord nTPM: 26.6
Samples: 4
Max nTPM: 31.3
Min nTPM: 21.8
Sample A
25.2
Sample A
28.2
Sample A
31.3
Sample A
21.8
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The Human Protein Atlas project is funded
