A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
29.0
nTPM
Monaco:
54.7
nTPM
Schmiedel:
21.6
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
29.0
HPA sample
nTPM
NK-cell nTPM: 29.0
Samples: 6
Max nTPM: 40.0
Min nTPM: 16.6
P10809_1013
38.5
P10809_1033
24.5
P10809_1052
29.6
P10809_1071
16.6
P10809_1093
24.9
P10809_1103
40.0
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
54.7
Monaco sample
nTPM
NK-cell nTPM: 54.7
Samples: 4
Max nTPM: 94.0
Min nTPM: 40.6
RHH5316_R3683
41.3
RHH5224_R3596
94.0
RHH5253_R3625
40.6
RHH5282_R3654
42.8
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.6
Schmiedel sample id
TPM
NK-cell TPM: 21.6
Samples: 90
Max TPM: 35.9
Min TPM: 15.2
NK_1
35.9
NK_2
35.7
NK_3
34.1
NK_4
31.3
NK_5
31.1
NK_6
29.7
NK_7
29.2
NK_8
28.0
NK_9
26.7
NK_10
26.5
NK_11
26.4
NK_12
26.3
NK_13
26.2
NK_14
26.2
NK_15
25.8
NK_16
25.8
NK_17
25.5
NK_18
25.4
NK_19
25.1
NK_20
25.1
NK_21
24.6
NK_22
24.5
NK_23
24.1
NK_24
23.7
NK_25
23.4
NK_26
23.3
NK_27
23.1
NK_28
22.9
NK_29
22.6
NK_30
22.2
NK_31
21.9
NK_32
21.8
NK_33
21.8
NK_34
21.7
NK_35
21.4
NK_36
21.4
NK_37
21.1
NK_38
21.0
NK_39
20.9
NK_40
20.8
NK_41
20.7
NK_42
20.6
NK_43
20.5
NK_44
20.4
NK_45
20.4
NK_46
20.4
NK_47
20.3
NK_48
20.2
NK_49
20.2
NK_50
20.1
NK_51
19.9
NK_52
19.9
NK_53
19.8
NK_54
19.8
NK_55
19.7
NK_56
19.6
NK_57
19.6
NK_58
19.4
NK_59
19.4
NK_60
19.3
NK_61
19.3
NK_62
19.1
NK_63
19.1
NK_64
18.8
NK_65
18.8
NK_66
18.6
NK_67
18.5
NK_68
18.5
NK_69
18.3
NK_70
18.3
NK_71
18.1
NK_72
18.1
NK_73
17.9
NK_74
17.8
NK_75
17.8
NK_76
17.5
NK_77
17.3
NK_78
17.2
NK_79
17.2
NK_80
17.0
NK_81
17.0
NK_82
17.0
NK_83
16.9
NK_84
16.6
NK_85
16.5
NK_86
16.5
NK_87
16.3
NK_88
16.3
NK_89
16.1
NK_90
15.2
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