A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
57.1
nTPM
Monaco:
177.2
nTPM
Schmiedel:
58.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
57.1
HPA sample
nTPM
Classical monocyte nTPM: 23.9
Samples: 6
Max nTPM: 28.5
Min nTPM: 17.8
P10809_1003
28.0
P10809_1020
28.5
P10809_1039
19.7
P10809_1058
22.4
P10809_1080
26.9
P10809_1107
17.8
Intermediate monocyte nTPM: 56.5
Samples: 6
Max nTPM: 67.8
Min nTPM: 48.7
P10809_1004
50.0
P10809_1023
67.8
P10809_1042
60.3
P10809_1061
54.6
P10809_1081
48.7
P10809_1108
57.5
Non-classical monocyte nTPM: 57.1
Samples: 5
Max nTPM: 101.7
Min nTPM: 32.3
P10809_1005
54.2
P10809_1053
47.7
P10809_1072
101.7
P10809_1082
32.3
P10809_1109
49.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
177.2
Monaco sample
nTPM
Classical monocyte nTPM: 104.0
Samples: 4
Max nTPM: 120.3
Min nTPM: 75.9
RHH5313_R3680
75.9
RHH5221_R3593
120.3
RHH5250_R3622
112.0
RHH5279_R3651
107.9
Intermediate monocyte nTPM: 167.4
Samples: 4
Max nTPM: 206.6
Min nTPM: 131.2
RHH5314_R3681
131.2
RHH5222_R3594
186.8
RHH5251_R3623
145.1
RHH5280_R3652
206.6
Non-classical monocyte nTPM: 177.2
Samples: 4
Max nTPM: 223.5
Min nTPM: 142.2
RHH5315_R3682
142.2
RHH5223_R3595
223.5
RHH5252_R3624
166.4
RHH5281_R3653
176.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
58.1
Schmiedel sample id
TPM
Classical monocyte TPM: 29.8
Samples: 91
Max TPM: 66.4
Min TPM: 19.2
MONOCYTES_1
66.4
MONOCYTES_2
42.7
MONOCYTES_3
39.6
MONOCYTES_4
39.0
MONOCYTES_5
37.8
MONOCYTES_6
37.5
MONOCYTES_7
36.9
MONOCYTES_8
36.7
MONOCYTES_9
36.6
MONOCYTES_10
35.9
MONOCYTES_11
35.7
MONOCYTES_12
34.9
MONOCYTES_13
34.8
MONOCYTES_14
34.2
MONOCYTES_15
34.0
MONOCYTES_16
34.0
MONOCYTES_17
33.8
MONOCYTES_18
33.3
MONOCYTES_19
32.9
MONOCYTES_20
32.8
MONOCYTES_21
32.7
MONOCYTES_22
32.6
MONOCYTES_23
32.6
MONOCYTES_24
32.1
MONOCYTES_25
32.0
MONOCYTES_26
31.8
MONOCYTES_27
31.6
MONOCYTES_28
31.6
MONOCYTES_29
31.6
MONOCYTES_30
31.3
MONOCYTES_31
31.2
MONOCYTES_32
31.1
MONOCYTES_33
30.9
MONOCYTES_34
30.8
MONOCYTES_35
30.4
MONOCYTES_36
30.3
MONOCYTES_37
30.0
MONOCYTES_38
29.8
MONOCYTES_39
29.6
MONOCYTES_40
29.4
MONOCYTES_41
29.3
MONOCYTES_42
29.2
MONOCYTES_43
28.8
MONOCYTES_44
28.7
MONOCYTES_45
28.7
MONOCYTES_46
28.7
MONOCYTES_47
28.5
MONOCYTES_48
28.5
MONOCYTES_49
28.4
MONOCYTES_50
28.4
MONOCYTES_51
28.3
MONOCYTES_52
28.1
MONOCYTES_53
28.1
MONOCYTES_54
27.9
MONOCYTES_55
27.9
MONOCYTES_56
27.8
MONOCYTES_57
27.8
MONOCYTES_58
27.3
MONOCYTES_59
27.2
MONOCYTES_60
27.2
MONOCYTES_61
27.2
MONOCYTES_62
27.1
MONOCYTES_63
27.1
MONOCYTES_64
27.0
MONOCYTES_65
27.0
MONOCYTES_66
26.9
MONOCYTES_67
26.7
MONOCYTES_68
26.7
MONOCYTES_69
26.6
MONOCYTES_70
26.5
MONOCYTES_71
26.5
MONOCYTES_72
25.8
MONOCYTES_73
25.7
MONOCYTES_74
25.5
MONOCYTES_75
25.4
MONOCYTES_76
25.3
MONOCYTES_77
25.2
MONOCYTES_78
25.1
MONOCYTES_79
25.1
MONOCYTES_80
25.0
MONOCYTES_81
24.6
MONOCYTES_82
24.5
MONOCYTES_83
24.1
MONOCYTES_84
23.8
MONOCYTES_85
23.7
MONOCYTES_86
23.4
MONOCYTES_87
22.5
MONOCYTES_88
22.4
MONOCYTES_89
22.1
MONOCYTES_90
20.9
MONOCYTES_91
19.2
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Non-classical monocyte TPM: 58.1
Samples: 90
Max TPM: 93.5
Min TPM: 33.3
M2_1
93.5
M2_2
82.4
M2_3
81.9
M2_4
77.8
M2_5
77.7
M2_6
76.4
M2_7
75.8
M2_8
74.9
M2_9
72.8
M2_10
71.1
M2_11
71.0
M2_12
71.0
M2_13
71.0
M2_14
69.2
M2_15
68.9
M2_16
68.4
M2_17
67.8
M2_18
67.6
M2_19
66.8
M2_20
66.7
M2_21
66.5
M2_22
65.8
M2_23
65.1
M2_24
64.7
M2_25
64.1
M2_26
63.8
M2_27
63.4
M2_28
63.2
M2_29
63.1
M2_30
62.7
M2_31
61.5
M2_32
61.5
M2_33
60.8
M2_34
60.6
M2_35
60.5
M2_36
59.4
M2_37
59.3
M2_38
58.8
M2_39
58.7
M2_40
58.3
M2_41
56.8
M2_42
56.5
M2_43
56.4
M2_44
56.2
M2_45
56.1
M2_46
55.8
M2_47
54.9
M2_48
54.9
M2_49
54.5
M2_50
54.2
M2_51
54.1
M2_52
54.1
M2_53
53.7
M2_54
53.2
M2_55
53.1
M2_56
53.1
M2_57
52.6
M2_58
52.6
M2_59
52.3
M2_60
52.2
M2_61
52.1
M2_62
51.8
M2_63
51.6
M2_64
51.1
M2_65
51.0
M2_66
51.0
M2_67
50.8
M2_68
50.8
M2_69
50.6
M2_70
50.5
M2_71
50.2
M2_72
50.1
M2_73
49.9
M2_74
49.0
M2_75
48.9
M2_76
48.8
M2_77
48.7
M2_78
48.2
M2_79
47.5
M2_80
47.5
M2_81
47.1
M2_82
46.9
M2_83
46.7
M2_84
46.1
M2_85
46.0
M2_86
45.3
M2_87
42.1
M2_88
40.9
M2_89
36.9
M2_90
33.3
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