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  • YBX1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:163.3 nTPM
HPA Brain:133.0 nTPM
GTEx:163.3 nTPM
FANTOM5:23.5 Scaled Tags Per Million
Pig:120.2 nTPM
Mouse:112.3 nTPM
Allen mouse:2.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

133.0
Sample id Sample description nTPM
Amygdala
nTPM: 133.0
2695 Female, age 67, right hemisphere 172.0
1987 Female, age 91, left hemisphere 135.2
2814 Male, age 76, right hemisphere 135.2
2514 Male, age 75, right hemisphere 120.1
2517 Female, age 94, left hemisphere 102.4
Basal amygdala
nTPM: 111.8
2827 Female, age 67, right hemisphere 141.0
2609 Male, age 75, right hemisphere 121.7
1955 Male, age 76, both hemispheres 110.7
2110 Male, age 80, left hemisphere 107.6
2243 Female, age 91, right hemisphere 100.7
2685 Female, age 94, left hemisphere 89.0
Central amygdala
nTPM: 113.8
2826 Female, age 94, left hemisphere 126.5
1905 Male, age 76, both hemispheres 117.0
2515 Male, age 75, right hemisphere 111.3
2239 Male, age 80, left hemisphere 107.3
2701 Female, age 91, right hemisphere 107.0
Corticomedial amygdala
nTPM: 103.5
2535 Female, age 67, right hemisphere 114.3
2242 Female, age 91, right hemisphere 109.4
2829 Male, age 80, left hemisphere 106.2
2428 Male, age 75, right hemisphere 100.8
2240 Male, age 76, both hemispheres 98.0
2429 Female, age 94, left hemisphere 92.3
Lateral amygdala
nTPM: 114.0
2830 Female, age 67, right hemisphere 146.1
2256 Male, age 80, left hemisphere 122.4
2516 Male, age 75, right hemisphere 114.9
1883 Male, age 76, both hemispheres 111.2
2534 Female, age 94, left hemisphere 99.3
2255 Female, age 91, right hemisphere 90.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

163.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 163.3
Samples: 181

Max nTPM: 325.7
Min nTPM: 80.4
Std nTPM: 45.0
Median nTPM: 159.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 325.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 324.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 323.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 289.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 268.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 266.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 246.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 246.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 245.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 243.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 232.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 229.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 229.3
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 225.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 224.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 224.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 222.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 222.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 217.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 217.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 217.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 216.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 215.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 215.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 215.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 214.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 213.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 212.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 211.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 209.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 205.8
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 204.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 200.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 197.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 196.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 195.0
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 192.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 191.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 190.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 189.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 189.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 188.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 188.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 188.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 187.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 185.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 184.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 182.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 181.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 180.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 177.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 177.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 177.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 177.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 175.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 175.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 175.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 174.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 173.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 173.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 173.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 173.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 172.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 172.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 172.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 171.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 171.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 171.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 170.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 170.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 169.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 169.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 168.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 167.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 167.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 165.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 164.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 164.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 163.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 163.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 163.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 162.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 162.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 162.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 162.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 162.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 161.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 161.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 160.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 159.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 159.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 158.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 158.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 157.9
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 157.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 157.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 157.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 156.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 156.0
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 155.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 155.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 155.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 154.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 154.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 154.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 153.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 153.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 153.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 152.9
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 152.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 152.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 151.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 151.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 150.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 148.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 147.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 147.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 146.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 146.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 145.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 143.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 142.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 141.9
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 139.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 138.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 136.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 136.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 135.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 135.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 134.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 134.7
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 134.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 133.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 132.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 131.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 130.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 130.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 129.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 128.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 128.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 124.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 124.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 124.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 123.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 123.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 123.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 122.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 121.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 121.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 119.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 118.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 118.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 117.8
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 117.6
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 117.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 115.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 115.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 115.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 114.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 114.5
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 113.4
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 113.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 110.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 109.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 109.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 109.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 108.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 106.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 105.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 104.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 95.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 94.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 94.3
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 90.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 88.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 88.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 86.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 83.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 80.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 23.5
FF:10151-102I7 76 years, female 23.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.2
Pig sample Sample description nTPM
Amygdala
nTPM: 120.2
Samples: 4

Max nTPM: 136.6
Min nTPM: 100.1
Sample A Female 131.4
Sample B Female 136.6
Sample C Male 112.8
Sample D Male 100.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

112.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 112.3
Samples: 4

Max nTPM: 128.0
Min nTPM: 97.7
Sample A Male 97.7
Sample B Male 110.9
Sample C Female 128.0
Sample D Female 112.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.5
743 Antisense, RP_Baylor_103125, Mouse strain C57BL/6J (56 days, male) 3.7
68341460 Antisense, RP_041207_01_F02, Mouse strain C57BL/6J (56 days, male) 1.3

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