A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.2
nTPM
Monaco:
26.8
nTPM
Schmiedel:
122.6
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.2
HPA sample
nTPM
Memory B-cell nTPM: 1.4
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.0
P10809_1017
1.4
P10809_1025
2.0
P10809_1044
0.0
P10809_1063
1.0
P10809_1092
1.4
P10809_1105
2.4
Naive B-cell nTPM: 2.2
Samples: 6
Max nTPM: 3.7
Min nTPM: 1.2
P10809_1011
2.0
P10809_1029
1.8
P10809_1048
3.7
P10809_1067
1.9
P10809_1091
1.2
P10809_1104
2.5
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
26.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 19.8
Samples: 4
Max nTPM: 28.4
Min nTPM: 12.3
RHH5310_R3677
19.9
RHH5218_R3590
18.7
RHH5247_R3619
12.3
RHH5276_R3648
28.4
Naive B-cell nTPM: 26.8
Samples: 4
Max nTPM: 33.8
Min nTPM: 21.1
RHH5308_R3675
23.8
RHH5216_R3588
21.1
RHH5245_R3617
33.8
RHH5274_R3646
28.4
Non-switched memory B-cell nTPM: 17.2
Samples: 4
Max nTPM: 21.8
Min nTPM: 11.8
RHH5309_R3676
11.8
RHH5217_R3589
20.6
RHH5246_R3618
14.5
RHH5275_R3647
21.8
Plasmablast nTPM: 15.6
Samples: 4
Max nTPM: 23.8
Min nTPM: 5.2
RHH5312_R3679
10.7
RHH5220_R3592
22.9
RHH5249_R3621
23.8
RHH5278_R3650
5.2
Switched memory B-cell nTPM: 20.3
Samples: 4
Max nTPM: 28.4
Min nTPM: 13.0
RHH5311_R3678
21.2
RHH5219_R3591
28.4
RHH5248_R3620
13.0
RHH5277_R3649
18.8
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
122.6
Schmiedel sample id
TPM
Naive B-cell TPM: 122.6
Samples: 91
Max TPM: 189.2
Min TPM: 48.8
B_CELL_NAIVE_1
189.2
B_CELL_NAIVE_2
183.3
B_CELL_NAIVE_3
170.4
B_CELL_NAIVE_4
169.2
B_CELL_NAIVE_5
167.9
B_CELL_NAIVE_6
164.2
B_CELL_NAIVE_7
161.4
B_CELL_NAIVE_8
160.6
B_CELL_NAIVE_9
160.5
B_CELL_NAIVE_10
158.0
B_CELL_NAIVE_11
149.7
B_CELL_NAIVE_12
142.7
B_CELL_NAIVE_13
141.6
B_CELL_NAIVE_14
140.5
B_CELL_NAIVE_15
138.7
B_CELL_NAIVE_16
138.5
B_CELL_NAIVE_17
138.4
B_CELL_NAIVE_18
137.6
B_CELL_NAIVE_19
136.6
B_CELL_NAIVE_20
134.5
B_CELL_NAIVE_21
133.4
B_CELL_NAIVE_22
132.9
B_CELL_NAIVE_23
132.6
B_CELL_NAIVE_24
132.5
B_CELL_NAIVE_25
131.7
B_CELL_NAIVE_26
131.7
B_CELL_NAIVE_27
129.7
B_CELL_NAIVE_28
129.3
B_CELL_NAIVE_29
128.5
B_CELL_NAIVE_30
128.1
B_CELL_NAIVE_31
127.3
B_CELL_NAIVE_32
127.0
B_CELL_NAIVE_33
126.5
B_CELL_NAIVE_34
126.3
B_CELL_NAIVE_35
126.0
B_CELL_NAIVE_36
124.7
B_CELL_NAIVE_37
124.3
B_CELL_NAIVE_38
124.1
B_CELL_NAIVE_39
123.3
B_CELL_NAIVE_40
121.7
B_CELL_NAIVE_41
121.7
B_CELL_NAIVE_42
120.5
B_CELL_NAIVE_43
119.1
B_CELL_NAIVE_44
118.9
B_CELL_NAIVE_45
118.7
B_CELL_NAIVE_46
117.8
B_CELL_NAIVE_47
117.8
B_CELL_NAIVE_48
117.4
B_CELL_NAIVE_49
117.3
B_CELL_NAIVE_50
117.3
B_CELL_NAIVE_51
116.9
B_CELL_NAIVE_52
116.7
B_CELL_NAIVE_53
116.4
B_CELL_NAIVE_54
116.4
B_CELL_NAIVE_55
115.9
B_CELL_NAIVE_56
115.5
B_CELL_NAIVE_57
114.6
B_CELL_NAIVE_58
114.1
B_CELL_NAIVE_59
113.6
B_CELL_NAIVE_60
112.1
B_CELL_NAIVE_61
111.6
B_CELL_NAIVE_62
111.0
B_CELL_NAIVE_63
110.7
B_CELL_NAIVE_64
110.2
B_CELL_NAIVE_65
110.0
B_CELL_NAIVE_66
109.9
B_CELL_NAIVE_67
109.8
B_CELL_NAIVE_68
109.5
B_CELL_NAIVE_69
108.9
B_CELL_NAIVE_70
108.7
B_CELL_NAIVE_71
107.8
B_CELL_NAIVE_72
107.7
B_CELL_NAIVE_73
107.7
B_CELL_NAIVE_74
106.9
B_CELL_NAIVE_75
106.9
B_CELL_NAIVE_76
105.4
B_CELL_NAIVE_77
105.2
B_CELL_NAIVE_78
105.1
B_CELL_NAIVE_79
105.1
B_CELL_NAIVE_80
104.2
B_CELL_NAIVE_81
103.1
B_CELL_NAIVE_82
102.7
B_CELL_NAIVE_83
100.8
B_CELL_NAIVE_84
100.7
B_CELL_NAIVE_85
100.5
B_CELL_NAIVE_86
97.1
B_CELL_NAIVE_87
96.4
B_CELL_NAIVE_88
93.8
B_CELL_NAIVE_89
92.2
B_CELL_NAIVE_90
73.3
B_CELL_NAIVE_91
48.8
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