A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.4
nTPM
Monaco:
47.2
nTPM
Schmiedel:
204.1
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.4
HPA sample
nTPM
Classical monocyte nTPM: 2.0
Samples: 6
Max nTPM: 2.8
Min nTPM: 1.3
P10809_1003
1.3
P10809_1020
2.0
P10809_1039
1.9
P10809_1058
2.8
P10809_1080
1.8
P10809_1107
2.2
Intermediate monocyte nTPM: 2.3
Samples: 6
Max nTPM: 4.4
Min nTPM: 0.4
P10809_1004
4.4
P10809_1023
2.5
P10809_1042
1.2
P10809_1061
0.4
P10809_1081
2.2
P10809_1108
3.2
Non-classical monocyte nTPM: 3.4
Samples: 5
Max nTPM: 6.4
Min nTPM: 1.9
P10809_1005
1.9
P10809_1053
2.3
P10809_1072
6.4
P10809_1082
3.4
P10809_1109
2.8
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
47.2
Monaco sample
nTPM
Classical monocyte nTPM: 32.4
Samples: 4
Max nTPM: 35.6
Min nTPM: 29.9
RHH5313_R3680
35.6
RHH5221_R3593
33.7
RHH5250_R3622
30.5
RHH5279_R3651
29.9
Intermediate monocyte nTPM: 47.2
Samples: 4
Max nTPM: 62.4
Min nTPM: 36.6
RHH5314_R3681
36.6
RHH5222_R3594
48.9
RHH5251_R3623
62.4
RHH5280_R3652
40.9
Non-classical monocyte nTPM: 33.3
Samples: 4
Max nTPM: 47.1
Min nTPM: 21.0
RHH5315_R3682
41.1
RHH5223_R3595
21.0
RHH5252_R3624
47.1
RHH5281_R3653
23.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
204.1
Schmiedel sample id
TPM
Classical monocyte TPM: 110.6
Samples: 91
Max TPM: 160.9
Min TPM: 76.2
MONOCYTES_1
160.9
MONOCYTES_2
154.4
MONOCYTES_3
149.1
MONOCYTES_4
145.9
MONOCYTES_5
142.4
MONOCYTES_6
142.0
MONOCYTES_7
140.6
MONOCYTES_8
140.1
MONOCYTES_9
138.8
MONOCYTES_10
138.4
MONOCYTES_11
138.2
MONOCYTES_12
137.1
MONOCYTES_13
134.6
MONOCYTES_14
134.3
MONOCYTES_15
131.2
MONOCYTES_16
130.6
MONOCYTES_17
128.9
MONOCYTES_18
128.9
MONOCYTES_19
127.5
MONOCYTES_20
126.3
MONOCYTES_21
125.9
MONOCYTES_22
124.9
MONOCYTES_23
123.7
MONOCYTES_24
123.0
MONOCYTES_25
122.0
MONOCYTES_26
120.9
MONOCYTES_27
120.5
MONOCYTES_28
120.2
MONOCYTES_29
120.2
MONOCYTES_30
119.5
MONOCYTES_31
118.2
MONOCYTES_32
116.2
MONOCYTES_33
116.0
MONOCYTES_34
115.2
MONOCYTES_35
114.7
MONOCYTES_36
114.2
MONOCYTES_37
112.6
MONOCYTES_38
110.8
MONOCYTES_39
109.5
MONOCYTES_40
109.5
MONOCYTES_41
108.1
MONOCYTES_42
108.1
MONOCYTES_43
108.0
MONOCYTES_44
107.1
MONOCYTES_45
106.8
MONOCYTES_46
106.7
MONOCYTES_47
106.5
MONOCYTES_48
106.4
MONOCYTES_49
106.4
MONOCYTES_50
106.3
MONOCYTES_51
104.8
MONOCYTES_52
104.4
MONOCYTES_53
104.4
MONOCYTES_54
104.2
MONOCYTES_55
104.0
MONOCYTES_56
102.9
MONOCYTES_57
102.1
MONOCYTES_58
101.9
MONOCYTES_59
101.3
MONOCYTES_60
101.0
MONOCYTES_61
100.8
MONOCYTES_62
100.2
MONOCYTES_63
99.8
MONOCYTES_64
99.8
MONOCYTES_65
99.6
MONOCYTES_66
99.5
MONOCYTES_67
98.7
MONOCYTES_68
98.2
MONOCYTES_69
96.5
MONOCYTES_70
95.8
MONOCYTES_71
95.7
MONOCYTES_72
94.9
MONOCYTES_73
94.8
MONOCYTES_74
93.7
MONOCYTES_75
93.2
MONOCYTES_76
92.5
MONOCYTES_77
92.0
MONOCYTES_78
91.2
MONOCYTES_79
91.1
MONOCYTES_80
89.4
MONOCYTES_81
88.5
MONOCYTES_82
87.9
MONOCYTES_83
86.6
MONOCYTES_84
86.1
MONOCYTES_85
85.8
MONOCYTES_86
85.2
MONOCYTES_87
84.7
MONOCYTES_88
83.3
MONOCYTES_89
78.6
MONOCYTES_90
78.1
MONOCYTES_91
76.2
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Non-classical monocyte TPM: 204.1
Samples: 90
Max TPM: 308.6
Min TPM: 116.3
M2_1
308.6
M2_2
302.6
M2_3
297.9
M2_4
282.8
M2_5
276.4
M2_6
267.5
M2_7
263.1
M2_8
260.8
M2_9
259.5
M2_10
254.0
M2_11
250.8
M2_12
242.8
M2_13
240.1
M2_14
237.0
M2_15
235.2
M2_16
230.5
M2_17
227.5
M2_18
227.4
M2_19
221.2
M2_20
220.5
M2_21
218.5
M2_22
218.3
M2_23
216.1
M2_24
215.6
M2_25
214.5
M2_26
213.6
M2_27
213.3
M2_28
212.9
M2_29
212.7
M2_30
212.4
M2_31
211.1
M2_32
210.5
M2_33
209.4
M2_34
208.4
M2_35
207.4
M2_36
207.0
M2_37
206.7
M2_38
205.4
M2_39
203.7
M2_40
202.7
M2_41
201.8
M2_42
201.7
M2_43
201.0
M2_44
200.8
M2_45
200.7
M2_46
200.6
M2_47
199.5
M2_48
199.3
M2_49
198.8
M2_50
198.6
M2_51
198.6
M2_52
197.5
M2_53
197.0
M2_54
196.4
M2_55
196.1
M2_56
195.9
M2_57
195.3
M2_58
194.9
M2_59
193.7
M2_60
193.3
M2_61
188.5
M2_62
186.2
M2_63
184.3
M2_64
184.1
M2_65
182.0
M2_66
181.6
M2_67
181.1
M2_68
180.8
M2_69
179.9
M2_70
179.5
M2_71
178.8
M2_72
178.7
M2_73
178.0
M2_74
175.1
M2_75
174.8
M2_76
174.0
M2_77
173.6
M2_78
171.4
M2_79
167.8
M2_80
166.8
M2_81
166.4
M2_82
165.3
M2_83
163.5
M2_84
162.6
M2_85
157.5
M2_86
154.2
M2_87
148.0
M2_88
146.3
M2_89
135.4
M2_90
116.3
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