A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
2.2
nTPM
Monaco:
37.9
nTPM
Schmiedel:
84.2
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
2.2
HPA sample
nTPM
Memory B-cell nTPM: 1.4
Samples: 6
Max nTPM: 2.7
Min nTPM: 0.4
P10809_1017
0.9
P10809_1025
1.1
P10809_1044
0.4
P10809_1063
2.7
P10809_1092
1.1
P10809_1105
2.2
Naive B-cell nTPM: 2.2
Samples: 6
Max nTPM: 3.0
Min nTPM: 1.3
P10809_1011
1.3
P10809_1029
1.6
P10809_1048
1.3
P10809_1067
3.0
P10809_1091
2.9
P10809_1104
2.9
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 20.6
Samples: 4
Max nTPM: 23.4
Min nTPM: 14.6
RHH5310_R3677
22.1
RHH5218_R3590
14.6
RHH5247_R3619
23.4
RHH5276_R3648
22.2
Naive B-cell nTPM: 37.9
Samples: 4
Max nTPM: 49.1
Min nTPM: 22.8
RHH5308_R3675
22.8
RHH5216_R3588
49.1
RHH5245_R3617
42.9
RHH5274_R3646
36.7
Non-switched memory B-cell nTPM: 29.1
Samples: 4
Max nTPM: 39.4
Min nTPM: 19.9
RHH5309_R3676
27.9
RHH5217_R3589
39.4
RHH5246_R3618
19.9
RHH5275_R3647
29.2
Plasmablast nTPM: 12.6
Samples: 4
Max nTPM: 18.6
Min nTPM: 9.5
RHH5312_R3679
18.6
RHH5220_R3592
11.0
RHH5249_R3621
11.2
RHH5278_R3650
9.5
Switched memory B-cell nTPM: 24.3
Samples: 4
Max nTPM: 25.7
Min nTPM: 22.8
RHH5311_R3678
22.8
RHH5219_R3591
25.4
RHH5248_R3620
25.7
RHH5277_R3649
23.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
84.2
Schmiedel sample id
TPM
Naive B-cell TPM: 84.2
Samples: 91
Max TPM: 113.3
Min TPM: 56.5
B_CELL_NAIVE_1
113.3
B_CELL_NAIVE_2
110.6
B_CELL_NAIVE_3
107.9
B_CELL_NAIVE_4
105.0
B_CELL_NAIVE_5
103.7
B_CELL_NAIVE_6
103.0
B_CELL_NAIVE_7
102.9
B_CELL_NAIVE_8
102.7
B_CELL_NAIVE_9
100.6
B_CELL_NAIVE_10
100.4
B_CELL_NAIVE_11
100.3
B_CELL_NAIVE_12
98.8
B_CELL_NAIVE_13
98.5
B_CELL_NAIVE_14
98.0
B_CELL_NAIVE_15
97.9
B_CELL_NAIVE_16
97.6
B_CELL_NAIVE_17
96.9
B_CELL_NAIVE_18
96.2
B_CELL_NAIVE_19
95.2
B_CELL_NAIVE_20
95.0
B_CELL_NAIVE_21
94.9
B_CELL_NAIVE_22
93.6
B_CELL_NAIVE_23
92.7
B_CELL_NAIVE_24
92.1
B_CELL_NAIVE_25
90.6
B_CELL_NAIVE_26
90.1
B_CELL_NAIVE_27
89.6
B_CELL_NAIVE_28
89.4
B_CELL_NAIVE_29
89.1
B_CELL_NAIVE_30
88.6
B_CELL_NAIVE_31
88.0
B_CELL_NAIVE_32
87.6
B_CELL_NAIVE_33
87.5
B_CELL_NAIVE_34
87.1
B_CELL_NAIVE_35
86.5
B_CELL_NAIVE_36
86.3
B_CELL_NAIVE_37
85.9
B_CELL_NAIVE_38
85.8
B_CELL_NAIVE_39
85.7
B_CELL_NAIVE_40
85.4
B_CELL_NAIVE_41
84.9
B_CELL_NAIVE_42
84.5
B_CELL_NAIVE_43
84.5
B_CELL_NAIVE_44
84.3
B_CELL_NAIVE_45
84.2
B_CELL_NAIVE_46
84.0
B_CELL_NAIVE_47
83.6
B_CELL_NAIVE_48
83.2
B_CELL_NAIVE_49
83.2
B_CELL_NAIVE_50
83.0
B_CELL_NAIVE_51
82.9
B_CELL_NAIVE_52
82.6
B_CELL_NAIVE_53
82.3
B_CELL_NAIVE_54
82.2
B_CELL_NAIVE_55
80.8
B_CELL_NAIVE_56
80.7
B_CELL_NAIVE_57
80.1
B_CELL_NAIVE_58
78.5
B_CELL_NAIVE_59
78.5
B_CELL_NAIVE_60
78.2
B_CELL_NAIVE_61
78.1
B_CELL_NAIVE_62
77.8
B_CELL_NAIVE_63
77.2
B_CELL_NAIVE_64
76.9
B_CELL_NAIVE_65
76.6
B_CELL_NAIVE_66
75.9
B_CELL_NAIVE_67
75.7
B_CELL_NAIVE_68
75.4
B_CELL_NAIVE_69
75.4
B_CELL_NAIVE_70
75.2
B_CELL_NAIVE_71
74.4
B_CELL_NAIVE_72
74.4
B_CELL_NAIVE_73
73.6
B_CELL_NAIVE_74
73.4
B_CELL_NAIVE_75
73.2
B_CELL_NAIVE_76
71.3
B_CELL_NAIVE_77
70.9
B_CELL_NAIVE_78
70.2
B_CELL_NAIVE_79
70.2
B_CELL_NAIVE_80
69.8
B_CELL_NAIVE_81
69.8
B_CELL_NAIVE_82
69.3
B_CELL_NAIVE_83
69.3
B_CELL_NAIVE_84
68.3
B_CELL_NAIVE_85
67.7
B_CELL_NAIVE_86
67.7
B_CELL_NAIVE_87
67.4
B_CELL_NAIVE_88
67.2
B_CELL_NAIVE_89
64.1
B_CELL_NAIVE_90
63.9
B_CELL_NAIVE_91
56.5
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