A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
3.9
nTPM
Monaco:
25.2
nTPM
Schmiedel:
37.4
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
3.9
HPA sample
nTPM
Classical monocyte nTPM: 1.2
Samples: 6
Max nTPM: 1.5
Min nTPM: 0.6
P10809_1003
0.6
P10809_1020
1.4
P10809_1039
0.9
P10809_1058
1.3
P10809_1080
1.2
P10809_1107
1.5
Intermediate monocyte nTPM: 1.4
Samples: 6
Max nTPM: 2.4
Min nTPM: 0.8
P10809_1004
0.8
P10809_1023
2.4
P10809_1042
1.2
P10809_1061
1.7
P10809_1081
1.0
P10809_1108
1.4
Non-classical monocyte nTPM: 3.9
Samples: 5
Max nTPM: 13.8
Min nTPM: 0.7
P10809_1005
0.7
P10809_1053
2.4
P10809_1072
13.8
P10809_1082
0.9
P10809_1109
1.9
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.2
Monaco sample
nTPM
Classical monocyte nTPM: 25.2
Samples: 4
Max nTPM: 33.3
Min nTPM: 14.6
RHH5313_R3680
24.3
RHH5221_R3593
28.4
RHH5250_R3622
33.3
RHH5279_R3651
14.6
Intermediate monocyte nTPM: 19.9
Samples: 4
Max nTPM: 20.8
Min nTPM: 18.1
RHH5314_R3681
20.8
RHH5222_R3594
19.8
RHH5251_R3623
20.7
RHH5280_R3652
18.1
Non-classical monocyte nTPM: 22.7
Samples: 4
Max nTPM: 34.5
Min nTPM: 18.1
RHH5315_R3682
19.3
RHH5223_R3595
34.5
RHH5252_R3624
18.9
RHH5281_R3653
18.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
37.4
Schmiedel sample id
TPM
Classical monocyte TPM: 35.6
Samples: 91
Max TPM: 52.5
Min TPM: 26.2
MONOCYTES_1
52.5
MONOCYTES_2
50.2
MONOCYTES_3
47.2
MONOCYTES_4
46.9
MONOCYTES_5
46.9
MONOCYTES_6
45.8
MONOCYTES_7
44.2
MONOCYTES_8
44.0
MONOCYTES_9
43.7
MONOCYTES_10
41.7
MONOCYTES_11
41.0
MONOCYTES_12
40.9
MONOCYTES_13
40.7
MONOCYTES_14
40.4
MONOCYTES_15
40.2
MONOCYTES_16
40.2
MONOCYTES_17
40.1
MONOCYTES_18
40.1
MONOCYTES_19
39.9
MONOCYTES_20
39.8
MONOCYTES_21
39.7
MONOCYTES_22
39.4
MONOCYTES_23
39.0
MONOCYTES_24
39.0
MONOCYTES_25
38.7
MONOCYTES_26
38.5
MONOCYTES_27
38.2
MONOCYTES_28
38.2
MONOCYTES_29
38.0
MONOCYTES_30
37.8
MONOCYTES_31
37.6
MONOCYTES_32
37.5
MONOCYTES_33
37.3
MONOCYTES_34
37.3
MONOCYTES_35
37.3
MONOCYTES_36
37.0
MONOCYTES_37
36.8
MONOCYTES_38
36.7
MONOCYTES_39
36.5
MONOCYTES_40
36.4
MONOCYTES_41
36.4
MONOCYTES_42
36.1
MONOCYTES_43
36.0
MONOCYTES_44
35.8
MONOCYTES_45
35.6
MONOCYTES_46
35.2
MONOCYTES_47
35.2
MONOCYTES_48
34.9
MONOCYTES_49
34.7
MONOCYTES_50
34.5
MONOCYTES_51
34.3
MONOCYTES_52
33.4
MONOCYTES_53
33.4
MONOCYTES_54
33.3
MONOCYTES_55
33.3
MONOCYTES_56
33.0
MONOCYTES_57
32.7
MONOCYTES_58
32.6
MONOCYTES_59
32.5
MONOCYTES_60
32.4
MONOCYTES_61
32.1
MONOCYTES_62
32.1
MONOCYTES_63
32.0
MONOCYTES_64
31.9
MONOCYTES_65
31.8
MONOCYTES_66
31.8
MONOCYTES_67
31.8
MONOCYTES_68
31.5
MONOCYTES_69
31.5
MONOCYTES_70
31.4
MONOCYTES_71
31.3
MONOCYTES_72
31.0
MONOCYTES_73
30.9
MONOCYTES_74
30.8
MONOCYTES_75
30.8
MONOCYTES_76
30.6
MONOCYTES_77
30.5
MONOCYTES_78
30.4
MONOCYTES_79
30.0
MONOCYTES_80
29.9
MONOCYTES_81
29.4
MONOCYTES_82
29.1
MONOCYTES_83
28.7
MONOCYTES_84
28.5
MONOCYTES_85
28.1
MONOCYTES_86
28.0
MONOCYTES_87
27.9
MONOCYTES_88
27.8
MONOCYTES_89
27.7
MONOCYTES_90
26.4
MONOCYTES_91
26.2
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Non-classical monocyte TPM: 37.4
Samples: 90
Max TPM: 53.5
Min TPM: 23.9
M2_1
53.5
M2_2
52.5
M2_3
49.2
M2_4
49.0
M2_5
48.8
M2_6
47.3
M2_7
47.3
M2_8
46.8
M2_9
46.2
M2_10
45.5
M2_11
44.9
M2_12
44.6
M2_13
44.4
M2_14
43.6
M2_15
43.2
M2_16
43.0
M2_17
42.1
M2_18
42.1
M2_19
42.0
M2_20
41.1
M2_21
40.8
M2_22
40.6
M2_23
40.5
M2_24
40.2
M2_25
40.1
M2_26
40.0
M2_27
39.9
M2_28
39.8
M2_29
39.7
M2_30
39.7
M2_31
39.6
M2_32
39.2
M2_33
39.1
M2_34
38.8
M2_35
38.3
M2_36
37.8
M2_37
37.7
M2_38
37.5
M2_39
37.4
M2_40
37.4
M2_41
37.4
M2_42
37.1
M2_43
36.7
M2_44
36.6
M2_45
36.6
M2_46
36.5
M2_47
36.4
M2_48
36.4
M2_49
36.3
M2_50
36.0
M2_51
35.9
M2_52
35.8
M2_53
35.6
M2_54
35.3
M2_55
35.2
M2_56
34.9
M2_57
34.7
M2_58
34.7
M2_59
34.7
M2_60
34.6
M2_61
34.3
M2_62
34.2
M2_63
34.2
M2_64
33.9
M2_65
33.9
M2_66
33.8
M2_67
33.7
M2_68
33.6
M2_69
33.6
M2_70
33.3
M2_71
32.8
M2_72
32.5
M2_73
32.5
M2_74
32.4
M2_75
32.3
M2_76
32.1
M2_77
31.8
M2_78
31.4
M2_79
31.2
M2_80
30.8
M2_81
30.7
M2_82
30.2
M2_83
30.2
M2_84
30.0
M2_85
29.8
M2_86
29.6
M2_87
29.0
M2_88
28.6
M2_89
28.5
M2_90
23.9
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