A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.3
nTPM
Monaco:
30.5
nTPM
Schmiedel:
43.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.3
HPA sample
nTPM
Memory B-cell nTPM: 7.3
Samples: 6
Max nTPM: 10.7
Min nTPM: 5.4
P10809_1017
7.6
P10809_1025
8.3
P10809_1044
5.8
P10809_1063
5.4
P10809_1092
10.7
P10809_1105
5.9
Naive B-cell nTPM: 6.8
Samples: 6
Max nTPM: 13.1
Min nTPM: 4.4
P10809_1011
5.7
P10809_1029
4.4
P10809_1048
13.1
P10809_1067
5.8
P10809_1091
6.5
P10809_1104
5.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 30.0
Samples: 4
Max nTPM: 37.9
Min nTPM: 18.0
RHH5310_R3677
27.3
RHH5218_R3590
37.9
RHH5247_R3619
36.6
RHH5276_R3648
18.0
Naive B-cell nTPM: 23.0
Samples: 4
Max nTPM: 30.1
Min nTPM: 18.9
RHH5308_R3675
18.9
RHH5216_R3588
30.1
RHH5245_R3617
19.7
RHH5274_R3646
23.2
Non-switched memory B-cell nTPM: 20.7
Samples: 4
Max nTPM: 24.3
Min nTPM: 16.2
RHH5309_R3676
23.8
RHH5217_R3589
18.6
RHH5246_R3618
16.2
RHH5275_R3647
24.3
Plasmablast nTPM: 30.5
Samples: 4
Max nTPM: 31.5
Min nTPM: 30.0
RHH5312_R3679
30.1
RHH5220_R3592
30.5
RHH5249_R3621
30.0
RHH5278_R3650
31.5
Switched memory B-cell nTPM: 24.5
Samples: 4
Max nTPM: 39.1
Min nTPM: 14.8
RHH5311_R3678
24.3
RHH5219_R3591
14.8
RHH5248_R3620
39.1
RHH5277_R3649
19.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
43.1
Schmiedel sample id
TPM
Naive B-cell TPM: 43.1
Samples: 91
Max TPM: 69.9
Min TPM: 23.7
B_CELL_NAIVE_1
69.9
B_CELL_NAIVE_2
69.3
B_CELL_NAIVE_3
65.8
B_CELL_NAIVE_4
63.5
B_CELL_NAIVE_5
62.3
B_CELL_NAIVE_6
59.3
B_CELL_NAIVE_7
58.8
B_CELL_NAIVE_8
58.7
B_CELL_NAIVE_9
57.3
B_CELL_NAIVE_10
55.4
B_CELL_NAIVE_11
55.2
B_CELL_NAIVE_12
54.8
B_CELL_NAIVE_13
54.2
B_CELL_NAIVE_14
53.4
B_CELL_NAIVE_15
52.2
B_CELL_NAIVE_16
51.6
B_CELL_NAIVE_17
51.4
B_CELL_NAIVE_18
50.5
B_CELL_NAIVE_19
49.5
B_CELL_NAIVE_20
49.1
B_CELL_NAIVE_21
48.9
B_CELL_NAIVE_22
48.1
B_CELL_NAIVE_23
47.9
B_CELL_NAIVE_24
47.2
B_CELL_NAIVE_25
46.9
B_CELL_NAIVE_26
46.2
B_CELL_NAIVE_27
45.6
B_CELL_NAIVE_28
45.5
B_CELL_NAIVE_29
45.4
B_CELL_NAIVE_30
45.2
B_CELL_NAIVE_31
45.1
B_CELL_NAIVE_32
45.0
B_CELL_NAIVE_33
44.4
B_CELL_NAIVE_34
44.4
B_CELL_NAIVE_35
44.4
B_CELL_NAIVE_36
44.1
B_CELL_NAIVE_37
44.0
B_CELL_NAIVE_38
43.8
B_CELL_NAIVE_39
43.7
B_CELL_NAIVE_40
43.6
B_CELL_NAIVE_41
43.6
B_CELL_NAIVE_42
43.1
B_CELL_NAIVE_43
42.8
B_CELL_NAIVE_44
42.8
B_CELL_NAIVE_45
42.8
B_CELL_NAIVE_46
42.3
B_CELL_NAIVE_47
42.1
B_CELL_NAIVE_48
41.5
B_CELL_NAIVE_49
41.4
B_CELL_NAIVE_50
41.1
B_CELL_NAIVE_51
40.9
B_CELL_NAIVE_52
40.4
B_CELL_NAIVE_53
40.2
B_CELL_NAIVE_54
40.0
B_CELL_NAIVE_55
40.0
B_CELL_NAIVE_56
39.9
B_CELL_NAIVE_57
39.8
B_CELL_NAIVE_58
39.4
B_CELL_NAIVE_59
39.3
B_CELL_NAIVE_60
38.8
B_CELL_NAIVE_61
38.4
B_CELL_NAIVE_62
38.0
B_CELL_NAIVE_63
37.7
B_CELL_NAIVE_64
37.7
B_CELL_NAIVE_65
37.3
B_CELL_NAIVE_66
37.0
B_CELL_NAIVE_67
37.0
B_CELL_NAIVE_68
36.9
B_CELL_NAIVE_69
36.5
B_CELL_NAIVE_70
36.0
B_CELL_NAIVE_71
35.7
B_CELL_NAIVE_72
35.2
B_CELL_NAIVE_73
34.7
B_CELL_NAIVE_74
34.4
B_CELL_NAIVE_75
34.4
B_CELL_NAIVE_76
34.3
B_CELL_NAIVE_77
34.3
B_CELL_NAIVE_78
34.2
B_CELL_NAIVE_79
34.2
B_CELL_NAIVE_80
33.9
B_CELL_NAIVE_81
33.6
B_CELL_NAIVE_82
33.2
B_CELL_NAIVE_83
32.7
B_CELL_NAIVE_84
32.7
B_CELL_NAIVE_85
32.3
B_CELL_NAIVE_86
31.1
B_CELL_NAIVE_87
29.8
B_CELL_NAIVE_88
28.7
B_CELL_NAIVE_89
28.2
B_CELL_NAIVE_90
26.8
B_CELL_NAIVE_91
23.7
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The Human Protein Atlas project is funded
