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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

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  • KLF6
IMMUNE CELL B-CELLS Show tissue menu
B-CELLS DENDRITIC CELLS GRANULOCYTES MONOCYTES NK-CELLS PROGENITORS T-CELLS TOTAL PBMC
Immune cells
B-cells
Immune cell methods
B-CELLS - Expression summary
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA:81.4 nTPM
Monaco:503.0 nTPM
Schmiedel:759.9 TPM

B-CELLS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

81.4
HPA sample nTPM
Memory B-cell
nTPM: 81.4
Samples: 6

Max nTPM: 108.9
Min nTPM: 33.6
P10809_1017 33.6
P10809_1025 108.9
P10809_1044 107.6
P10809_1063 81.9
P10809_1092 105.4
P10809_1105 50.8
Naive B-cell
nTPM: 71.3
Samples: 6

Max nTPM: 174.2
Min nTPM: 19.2
P10809_1011 19.2
P10809_1029 75.2
P10809_1048 174.2
P10809_1067 56.6
P10809_1091 67.2
P10809_1104 35.1

B-CELLS - Monaco RNA-seqi

RNA-Seq data generated by Monaco et al is reported as average nTPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

503.0
Monaco sample nTPM
Exhausted memory B-cell
nTPM: 441.3
Samples: 4

Max nTPM: 594.3
Min nTPM: 260.0
RHH5310_R3677 333.4
RHH5218_R3590 594.3
RHH5247_R3619 577.4
RHH5276_R3648 260.0
Naive B-cell
nTPM: 310.2
Samples: 4

Max nTPM: 556.5
Min nTPM: 177.7
RHH5308_R3675 177.7
RHH5216_R3588 556.5
RHH5245_R3617 319.5
RHH5274_R3646 187.1
Non-switched memory B-cell
nTPM: 395.1
Samples: 4

Max nTPM: 587.0
Min nTPM: 237.0
RHH5309_R3676 237.0
RHH5217_R3589 587.0
RHH5246_R3618 497.7
RHH5275_R3647 258.8
Plasmablast
nTPM: 94.1
Samples: 4

Max nTPM: 121.7
Min nTPM: 69.0
RHH5312_R3679 69.0
RHH5220_R3592 100.1
RHH5249_R3621 121.7
RHH5278_R3650 85.7
Switched memory B-cell
nTPM: 503.0
Samples: 4

Max nTPM: 644.2
Min nTPM: 346.1
RHH5311_R3678 428.2
RHH5219_R3591 593.6
RHH5248_R3620 644.2
RHH5277_R3649 346.1

B-CELLS - Schmiedel RNA-seqi

RNA-Seq data generated by Schmiedel et al is reported as average TPM.

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.

Max subtype TPMi

Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.

759.9
Schmiedel sample id TPM
Naive B-cell
TPM: 759.9
Samples: 91

Max TPM: 2347.5
Min TPM: 396.0
B_CELL_NAIVE_1 2347.5
B_CELL_NAIVE_2 1765.1
B_CELL_NAIVE_3 1718.9
B_CELL_NAIVE_4 1627.8
B_CELL_NAIVE_5 1497.1
B_CELL_NAIVE_6 1378.2
B_CELL_NAIVE_7 1271.6
B_CELL_NAIVE_8 1203.4
B_CELL_NAIVE_9 1199.1
B_CELL_NAIVE_10 1052.8
B_CELL_NAIVE_11 1048.3
B_CELL_NAIVE_12 1012.5
B_CELL_NAIVE_13 1004.2
B_CELL_NAIVE_14 985.5
B_CELL_NAIVE_15 948.8
B_CELL_NAIVE_16 904.0
B_CELL_NAIVE_17 900.8
B_CELL_NAIVE_18 856.8
B_CELL_NAIVE_19 829.2
B_CELL_NAIVE_20 828.6
B_CELL_NAIVE_21 825.1
B_CELL_NAIVE_22 824.2
B_CELL_NAIVE_23 811.1
B_CELL_NAIVE_24 793.7
B_CELL_NAIVE_25 792.0
B_CELL_NAIVE_26 789.5
B_CELL_NAIVE_27 789.1
B_CELL_NAIVE_28 787.4
B_CELL_NAIVE_29 770.9
B_CELL_NAIVE_30 764.4
B_CELL_NAIVE_31 755.1
B_CELL_NAIVE_32 748.3
B_CELL_NAIVE_33 748.2
B_CELL_NAIVE_34 743.4
B_CELL_NAIVE_35 728.9
B_CELL_NAIVE_36 728.1
B_CELL_NAIVE_37 725.0
B_CELL_NAIVE_38 715.9
B_CELL_NAIVE_39 699.1
B_CELL_NAIVE_40 695.8
B_CELL_NAIVE_41 693.0
B_CELL_NAIVE_42 688.3
B_CELL_NAIVE_43 688.1
B_CELL_NAIVE_44 677.0
B_CELL_NAIVE_45 676.5
B_CELL_NAIVE_46 674.8
B_CELL_NAIVE_47 667.1
B_CELL_NAIVE_48 663.9
B_CELL_NAIVE_49 661.8
B_CELL_NAIVE_50 645.9
B_CELL_NAIVE_51 644.5
B_CELL_NAIVE_52 642.0
B_CELL_NAIVE_53 641.1
B_CELL_NAIVE_54 639.7
B_CELL_NAIVE_55 630.8
B_CELL_NAIVE_56 618.6
B_CELL_NAIVE_57 616.9
B_CELL_NAIVE_58 614.9
B_CELL_NAIVE_59 613.2
B_CELL_NAIVE_60 612.5
B_CELL_NAIVE_61 612.0
B_CELL_NAIVE_62 597.7
B_CELL_NAIVE_63 591.8
B_CELL_NAIVE_64 583.6
B_CELL_NAIVE_65 583.1
B_CELL_NAIVE_66 582.2
B_CELL_NAIVE_67 581.8
B_CELL_NAIVE_68 580.0
B_CELL_NAIVE_69 579.5
B_CELL_NAIVE_70 577.0
B_CELL_NAIVE_71 559.8
B_CELL_NAIVE_72 557.6
B_CELL_NAIVE_73 552.6
B_CELL_NAIVE_74 552.0
B_CELL_NAIVE_75 543.8
B_CELL_NAIVE_76 533.5
B_CELL_NAIVE_77 530.8
B_CELL_NAIVE_78 528.9
B_CELL_NAIVE_79 527.9
B_CELL_NAIVE_80 517.0
B_CELL_NAIVE_81 515.1
B_CELL_NAIVE_82 509.4
B_CELL_NAIVE_83 508.8
B_CELL_NAIVE_84 502.4
B_CELL_NAIVE_85 496.6
B_CELL_NAIVE_86 485.5
B_CELL_NAIVE_87 479.5
B_CELL_NAIVE_88 469.3
B_CELL_NAIVE_89 463.8
B_CELL_NAIVE_90 423.5
B_CELL_NAIVE_91 396.0
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