A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
81.4
nTPM
Monaco:
503.0
nTPM
Schmiedel:
759.9
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
81.4
HPA sample
nTPM
Memory B-cell nTPM: 81.4
Samples: 6
Max nTPM: 108.9
Min nTPM: 33.6
P10809_1017
33.6
P10809_1025
108.9
P10809_1044
107.6
P10809_1063
81.9
P10809_1092
105.4
P10809_1105
50.8
Naive B-cell nTPM: 71.3
Samples: 6
Max nTPM: 174.2
Min nTPM: 19.2
P10809_1011
19.2
P10809_1029
75.2
P10809_1048
174.2
P10809_1067
56.6
P10809_1091
67.2
P10809_1104
35.1
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
503.0
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 441.3
Samples: 4
Max nTPM: 594.3
Min nTPM: 260.0
RHH5310_R3677
333.4
RHH5218_R3590
594.3
RHH5247_R3619
577.4
RHH5276_R3648
260.0
Naive B-cell nTPM: 310.2
Samples: 4
Max nTPM: 556.5
Min nTPM: 177.7
RHH5308_R3675
177.7
RHH5216_R3588
556.5
RHH5245_R3617
319.5
RHH5274_R3646
187.1
Non-switched memory B-cell nTPM: 395.1
Samples: 4
Max nTPM: 587.0
Min nTPM: 237.0
RHH5309_R3676
237.0
RHH5217_R3589
587.0
RHH5246_R3618
497.7
RHH5275_R3647
258.8
Plasmablast nTPM: 94.1
Samples: 4
Max nTPM: 121.7
Min nTPM: 69.0
RHH5312_R3679
69.0
RHH5220_R3592
100.1
RHH5249_R3621
121.7
RHH5278_R3650
85.7
Switched memory B-cell nTPM: 503.0
Samples: 4
Max nTPM: 644.2
Min nTPM: 346.1
RHH5311_R3678
428.2
RHH5219_R3591
593.6
RHH5248_R3620
644.2
RHH5277_R3649
346.1
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
759.9
Schmiedel sample id
TPM
Naive B-cell TPM: 759.9
Samples: 91
Max TPM: 2347.5
Min TPM: 396.0
B_CELL_NAIVE_1
2347.5
B_CELL_NAIVE_2
1765.1
B_CELL_NAIVE_3
1718.9
B_CELL_NAIVE_4
1627.8
B_CELL_NAIVE_5
1497.1
B_CELL_NAIVE_6
1378.2
B_CELL_NAIVE_7
1271.6
B_CELL_NAIVE_8
1203.4
B_CELL_NAIVE_9
1199.1
B_CELL_NAIVE_10
1052.8
B_CELL_NAIVE_11
1048.3
B_CELL_NAIVE_12
1012.5
B_CELL_NAIVE_13
1004.2
B_CELL_NAIVE_14
985.5
B_CELL_NAIVE_15
948.8
B_CELL_NAIVE_16
904.0
B_CELL_NAIVE_17
900.8
B_CELL_NAIVE_18
856.8
B_CELL_NAIVE_19
829.2
B_CELL_NAIVE_20
828.6
B_CELL_NAIVE_21
825.1
B_CELL_NAIVE_22
824.2
B_CELL_NAIVE_23
811.1
B_CELL_NAIVE_24
793.7
B_CELL_NAIVE_25
792.0
B_CELL_NAIVE_26
789.5
B_CELL_NAIVE_27
789.1
B_CELL_NAIVE_28
787.4
B_CELL_NAIVE_29
770.9
B_CELL_NAIVE_30
764.4
B_CELL_NAIVE_31
755.1
B_CELL_NAIVE_32
748.3
B_CELL_NAIVE_33
748.2
B_CELL_NAIVE_34
743.4
B_CELL_NAIVE_35
728.9
B_CELL_NAIVE_36
728.1
B_CELL_NAIVE_37
725.0
B_CELL_NAIVE_38
715.9
B_CELL_NAIVE_39
699.1
B_CELL_NAIVE_40
695.8
B_CELL_NAIVE_41
693.0
B_CELL_NAIVE_42
688.3
B_CELL_NAIVE_43
688.1
B_CELL_NAIVE_44
677.0
B_CELL_NAIVE_45
676.5
B_CELL_NAIVE_46
674.8
B_CELL_NAIVE_47
667.1
B_CELL_NAIVE_48
663.9
B_CELL_NAIVE_49
661.8
B_CELL_NAIVE_50
645.9
B_CELL_NAIVE_51
644.5
B_CELL_NAIVE_52
642.0
B_CELL_NAIVE_53
641.1
B_CELL_NAIVE_54
639.7
B_CELL_NAIVE_55
630.8
B_CELL_NAIVE_56
618.6
B_CELL_NAIVE_57
616.9
B_CELL_NAIVE_58
614.9
B_CELL_NAIVE_59
613.2
B_CELL_NAIVE_60
612.5
B_CELL_NAIVE_61
612.0
B_CELL_NAIVE_62
597.7
B_CELL_NAIVE_63
591.8
B_CELL_NAIVE_64
583.6
B_CELL_NAIVE_65
583.1
B_CELL_NAIVE_66
582.2
B_CELL_NAIVE_67
581.8
B_CELL_NAIVE_68
580.0
B_CELL_NAIVE_69
579.5
B_CELL_NAIVE_70
577.0
B_CELL_NAIVE_71
559.8
B_CELL_NAIVE_72
557.6
B_CELL_NAIVE_73
552.6
B_CELL_NAIVE_74
552.0
B_CELL_NAIVE_75
543.8
B_CELL_NAIVE_76
533.5
B_CELL_NAIVE_77
530.8
B_CELL_NAIVE_78
528.9
B_CELL_NAIVE_79
527.9
B_CELL_NAIVE_80
517.0
B_CELL_NAIVE_81
515.1
B_CELL_NAIVE_82
509.4
B_CELL_NAIVE_83
508.8
B_CELL_NAIVE_84
502.4
B_CELL_NAIVE_85
496.6
B_CELL_NAIVE_86
485.5
B_CELL_NAIVE_87
479.5
B_CELL_NAIVE_88
469.3
B_CELL_NAIVE_89
463.8
B_CELL_NAIVE_90
423.5
B_CELL_NAIVE_91
396.0
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