A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
105.0
nTPM
Monaco:
1127.1
nTPM
Schmiedel:
1087.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
105.0
HPA sample
nTPM
Classical monocyte nTPM: 85.2
Samples: 6
Max nTPM: 97.8
Min nTPM: 65.1
P10809_1003
65.1
P10809_1020
93.0
P10809_1039
97.8
P10809_1058
74.7
P10809_1080
96.6
P10809_1107
83.9
Intermediate monocyte nTPM: 74.2
Samples: 6
Max nTPM: 91.7
Min nTPM: 49.5
P10809_1004
49.5
P10809_1023
91.7
P10809_1042
74.2
P10809_1061
79.4
P10809_1081
82.5
P10809_1108
67.7
Non-classical monocyte nTPM: 105.0
Samples: 5
Max nTPM: 166.0
Min nTPM: 47.9
P10809_1005
47.9
P10809_1053
110.9
P10809_1072
166.0
P10809_1082
112.0
P10809_1109
88.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1127.1
Monaco sample
nTPM
Classical monocyte nTPM: 1127.1
Samples: 4
Max nTPM: 1524.2
Min nTPM: 707.2
RHH5313_R3680
707.2
RHH5221_R3593
1524.2
RHH5250_R3622
1462.2
RHH5279_R3651
814.7
Intermediate monocyte nTPM: 1089.1
Samples: 4
Max nTPM: 1518.4
Min nTPM: 612.6
RHH5314_R3681
612.6
RHH5222_R3594
1466.0
RHH5251_R3623
1518.4
RHH5280_R3652
759.4
Non-classical monocyte nTPM: 886.3
Samples: 4
Max nTPM: 1255.4
Min nTPM: 474.0
RHH5315_R3682
474.0
RHH5223_R3595
1255.4
RHH5252_R3624
1157.1
RHH5281_R3653
658.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
1087.2
Schmiedel sample id
TPM
Classical monocyte TPM: 979.5
Samples: 91
Max TPM: 1885.0
Min TPM: 446.2
MONOCYTES_1
1885.0
MONOCYTES_2
1881.0
MONOCYTES_3
1704.9
MONOCYTES_4
1483.0
MONOCYTES_5
1454.7
MONOCYTES_6
1446.7
MONOCYTES_7
1382.0
MONOCYTES_8
1375.0
MONOCYTES_9
1371.4
MONOCYTES_10
1365.1
MONOCYTES_11
1359.6
MONOCYTES_12
1319.1
MONOCYTES_13
1267.0
MONOCYTES_14
1264.8
MONOCYTES_15
1259.3
MONOCYTES_16
1243.8
MONOCYTES_17
1202.5
MONOCYTES_18
1185.7
MONOCYTES_19
1165.3
MONOCYTES_20
1164.7
MONOCYTES_21
1140.5
MONOCYTES_22
1118.0
MONOCYTES_23
1114.1
MONOCYTES_24
1113.9
MONOCYTES_25
1100.2
MONOCYTES_26
1094.8
MONOCYTES_27
1083.4
MONOCYTES_28
1080.3
MONOCYTES_29
1074.6
MONOCYTES_30
1070.7
MONOCYTES_31
1068.8
MONOCYTES_32
1065.6
MONOCYTES_33
1060.3
MONOCYTES_34
1057.1
MONOCYTES_35
1041.6
MONOCYTES_36
1037.5
MONOCYTES_37
1017.7
MONOCYTES_38
1015.5
MONOCYTES_39
1013.0
MONOCYTES_40
1012.9
MONOCYTES_41
998.4
MONOCYTES_42
991.7
MONOCYTES_43
975.3
MONOCYTES_44
959.9
MONOCYTES_45
958.3
MONOCYTES_46
951.1
MONOCYTES_47
950.3
MONOCYTES_48
923.9
MONOCYTES_49
918.2
MONOCYTES_50
912.2
MONOCYTES_51
910.9
MONOCYTES_52
909.4
MONOCYTES_53
900.4
MONOCYTES_54
896.2
MONOCYTES_55
896.2
MONOCYTES_56
887.6
MONOCYTES_57
886.8
MONOCYTES_58
882.2
MONOCYTES_59
867.6
MONOCYTES_60
866.4
MONOCYTES_61
850.7
MONOCYTES_62
832.8
MONOCYTES_63
820.8
MONOCYTES_64
820.3
MONOCYTES_65
813.7
MONOCYTES_66
796.0
MONOCYTES_67
788.2
MONOCYTES_68
768.1
MONOCYTES_69
761.3
MONOCYTES_70
758.8
MONOCYTES_71
755.7
MONOCYTES_72
753.5
MONOCYTES_73
751.0
MONOCYTES_74
731.1
MONOCYTES_75
712.3
MONOCYTES_76
703.1
MONOCYTES_77
691.6
MONOCYTES_78
682.9
MONOCYTES_79
674.3
MONOCYTES_80
672.8
MONOCYTES_81
642.6
MONOCYTES_82
641.1
MONOCYTES_83
636.3
MONOCYTES_84
617.5
MONOCYTES_85
614.7
MONOCYTES_86
609.2
MONOCYTES_87
607.8
MONOCYTES_88
555.4
MONOCYTES_89
511.3
MONOCYTES_90
504.9
MONOCYTES_91
446.2
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Non-classical monocyte TPM: 1087.3
Samples: 90
Max TPM: 3427.0
Min TPM: 561.7
M2_1
3427.0
M2_2
2078.6
M2_3
1850.7
M2_4
1673.8
M2_5
1593.9
M2_6
1526.1
M2_7
1518.9
M2_8
1508.8
M2_9
1457.9
M2_10
1441.5
M2_11
1413.7
M2_12
1412.4
M2_13
1367.9
M2_14
1352.5
M2_15
1342.0
M2_16
1341.5
M2_17
1298.2
M2_18
1291.4
M2_19
1275.8
M2_20
1260.8
M2_21
1260.6
M2_22
1242.3
M2_23
1223.3
M2_24
1219.3
M2_25
1193.2
M2_26
1170.4
M2_27
1158.5
M2_28
1137.9
M2_29
1117.0
M2_30
1102.4
M2_31
1101.3
M2_32
1084.5
M2_33
1084.0
M2_34
1082.5
M2_35
1068.9
M2_36
1067.3
M2_37
1063.3
M2_38
1057.1
M2_39
1056.4
M2_40
1047.0
M2_41
1045.6
M2_42
1040.8
M2_43
1036.8
M2_44
1035.0
M2_45
1027.6
M2_46
1025.0
M2_47
1023.2
M2_48
1019.0
M2_49
992.4
M2_50
985.3
M2_51
981.8
M2_52
978.0
M2_53
971.2
M2_54
956.7
M2_55
953.4
M2_56
946.0
M2_57
943.8
M2_58
930.0
M2_59
927.6
M2_60
921.3
M2_61
915.2
M2_62
913.9
M2_63
913.1
M2_64
900.2
M2_65
895.8
M2_66
892.9
M2_67
891.8
M2_68
868.8
M2_69
866.3
M2_70
865.3
M2_71
863.3
M2_72
852.1
M2_73
850.7
M2_74
849.7
M2_75
843.3
M2_76
833.6
M2_77
825.2
M2_78
822.0
M2_79
806.7
M2_80
798.9
M2_81
794.9
M2_82
776.1
M2_83
735.0
M2_84
734.1
M2_85
732.2
M2_86
694.5
M2_87
679.8
M2_88
587.7
M2_89
576.6
M2_90
561.7
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