MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.5 nTPM
HPA Brain:50.9 nTPM
GTEx:52.5 nTPM
FANTOM5:97.9 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:36.3 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.1
2019 Male, age 18, unknown 64.1
2411 Female, age 72, unknown 54.3
1830 Male, age 51, unknown 53.0
1870 Female, age 42, unknown 52.4
1833 Male, age 53, unknown 49.6
2828 Female, age 72, unknown 41.2
1827 Male, age 72, unknown 38.9
2666 Male, age 74, left hemisphere 36.7
2219 Male, age 76, both hemispheres 31.7
2586 Male, age 75, left hemisphere 29.0
Dorsal raphe nucleus
nTPM: 45.1
2750 Male, age 76, both hemispheres 51.1
1828 Male, age 53, unknown 48.1
2298 Female, age 72, unknown 43.5
2016 Female, age 72, unknown 42.0
2047 Male, age 72, unknown 41.0
Inferior colliculus
nTPM: 39.5
2097 Female, age 72, unknown 42.1
1848 Female, age 42, unknown 41.2
1890 Male, age 53, unknown 39.0
2849 Male, age 72, unknown 35.5
Median raphe nucleus
nTPM: 38.3
2220 Male, age 76, midline 38.3
Periaquaductal grey, anterior
nTPM: 40.3
2502 Female, age 75, unknown 48.7
1947 Male, age 18, unknown 36.5
1795 Male, age 51, unknown 35.6
Periaquaductal grey, dorsal
nTPM: 34.4
2464 Female, age 72, unknown 39.3
2850 Male, age 76, both hemispheres 38.2
1831 Male, age 72, unknown 30.3
1840 Male, age 53, unknown 29.8
Periaquaductal grey, lateral
nTPM: 39.6
2272 Male, age 74, both hemispheres 47.5
2140 Male, age 76, both hemispheres 36.9
2053 Male, age 18, unknown 34.6
Pretectal area
nTPM: 42.1
2273 Male, age 74, both hemispheres 51.3
2007 Male, age 72, unknown 50.3
1817 Female, age 42, unknown 44.4
1944 Female, age 72, unknown 44.2
1815 Male, age 53, unknown 43.9
2316 Male, age 76, right hemisphere 41.5
1816 Male, age 51, unknown 40.4
2224 Female, age 72, unknown 39.8
2667 Female, age 75, unknown 36.8
2825 Male, age 18, unknown 36.5
2407 Male, age 75, both hemispheres 33.5
Red nucleus
nTPM: 50.9
2785 Male, age 18, unknown 63.2
1865 Male, age 51, unknown 57.6
1821 Female, age 72, unknown 57.4
2823 Male, age 76, right hemisphere 55.2
1904 Male, age 53, unknown 54.6
2725 Female, age 75, unknown 51.9
2503 Female, age 72, unknown 51.6
1954 Female, age 42, unknown 51.1
2769 Male, age 72, unknown 50.8
2227 Male, age 72, unknown 50.7
2588 Male, age 74, left hemisphere 34.5
2584 Male, age 75, left hemisphere 31.7
Substantia nigra
nTPM: 42.1
2409 Female, age 72, unknown 51.4
1889 Female, age 72, unknown 46.5
1851 Male, age 51, unknown 45.6
2241 Male, age 72, unknown 44.5
1941 Male, age 53, unknown 41.2
2665 Male, age 74, both hemispheres 41.1
1916 Female, age 42, unknown 40.1
2590 Female, age 75, unknown 39.7
2583 Male, age 75, right hemisphere 36.9
2699 Male, age 18, unknown 33.5
Superior colliculus
nTPM: 42.0
1913 Female, age 42, unknown 53.6
1995 Male, age 72, unknown 48.4
1895 Male, age 76, right hemisphere 48.1
2587 Male, age 74, left hemisphere 47.6
2261 Male, age 18, unknown 39.5
2668 Female, age 75, unknown 39.1
2087 Female, age 72, unknown 38.2
1839 Male, age 51, unknown 37.9
1796 Male, age 53, unknown 37.6
2664 Male, age 75, both hemispheres 30.0
Ventral tegmental area
nTPM: 44.6
2223 Female, age 72, unknown 56.0
2410 Female, age 72, unknown 53.0
2218 Male, age 76, both hemispheres 41.7
2021 Male, age 53, unknown 40.8
1915 Female, age 42, unknown 39.3
1942 Male, age 51, unknown 36.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 52.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.5
Samples: 183

Max nTPM: 104.1
Min nTPM: 24.1
Std nTPM: 15.1
Median nTPM: 49.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 104.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 97.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 91.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 85.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 84.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 83.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 82.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 81.5
GTEX-ZAK1-0011-R2a-SM-GPRX1 50-59 years, female 80.4
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 79.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 79.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.9
FF:10158-103A5 76 years, female 97.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 22.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.7
Samples: 4

Max nTPM: 23.1
Min nTPM: 19.3
Sample A Female 23.1
Sample B Female 20.5
Sample C Male 19.3
Sample D Male 19.9
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 32.2
Min nTPM: 16.4
Sample A Female 32.2
Sample B Female 17.3
Sample C Male 23.2
Sample D Male 16.4
Periaqueductal gray
nTPM: 16.9
Samples: 3

Max nTPM: 17.2
Min nTPM: 16.3
Sample B Female 17.2
Sample C Male 17.2
Sample D Male 16.3
Superior colliculi
nTPM: 18.8
Samples: 4

Max nTPM: 21.4
Min nTPM: 16.4
Sample A Female 18.8
Sample B Female 16.4
Sample C Male 21.4
Sample D Male 18.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 39.3
Min nTPM: 33.0
Sample A Male 33.0
Sample B Male 39.3
Sample C Female 37.8
Sample D Female 35.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
830 Antisense, RP_Baylor_102977, Mouse strain C57BL/6J (56 days, male) 0.0
831 Antisense, RP_Baylor_102977, Mouse strain C57BL/6J (56 days, male) 0.0

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