MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.4 nTPM
HPA Brain:30.0 nTPM
GTEx:26.4 nTPM
FANTOM5:107.4 Scaled Tags Per Million
Pig:36.9 nTPM
Mouse:12.0 nTPM
Allen mouse:1.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 30.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 23.3
2586 Male, age 75, left hemisphere 38.8
2828 Female, age 72, unknown 29.9
2666 Male, age 74, left hemisphere 25.9
1870 Female, age 42, unknown 24.5
1830 Male, age 51, unknown 23.7
1833 Male, age 53, unknown 22.3
2019 Male, age 18, unknown 19.4
2411 Female, age 72, unknown 18.8
1827 Male, age 72, unknown 18.7
2219 Male, age 76, both hemispheres 11.0
Dorsal raphe nucleus
nTPM: 29.2
2016 Female, age 72, unknown 34.7
2047 Male, age 72, unknown 32.1
1828 Male, age 53, unknown 30.8
2298 Female, age 72, unknown 28.3
2750 Male, age 76, both hemispheres 19.9
Inferior colliculus
nTPM: 24.8
1848 Female, age 42, unknown 26.6
1890 Male, age 53, unknown 25.4
2097 Female, age 72, unknown 23.5
2849 Male, age 72, unknown 23.5
Median raphe nucleus
nTPM: 22.4
2220 Male, age 76, midline 22.4
Periaquaductal grey, anterior
nTPM: 25.2
1795 Male, age 51, unknown 26.5
1947 Male, age 18, unknown 26.5
2502 Female, age 75, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 28.7
2850 Male, age 76, both hemispheres 39.1
1831 Male, age 72, unknown 29.9
1840 Male, age 53, unknown 23.5
2464 Female, age 72, unknown 22.2
Periaquaductal grey, lateral
nTPM: 30.0
2140 Male, age 76, both hemispheres 33.1
2053 Male, age 18, unknown 31.4
2272 Male, age 74, both hemispheres 25.5
Pretectal area
nTPM: 23.0
2273 Male, age 74, both hemispheres 27.9
2825 Male, age 18, unknown 27.6
2407 Male, age 75, both hemispheres 26.6
2224 Female, age 72, unknown 25.0
2316 Male, age 76, right hemisphere 24.6
1817 Female, age 42, unknown 22.8
1944 Female, age 72, unknown 22.1
1815 Male, age 53, unknown 21.5
2667 Female, age 75, unknown 21.1
2007 Male, age 72, unknown 18.0
1816 Male, age 51, unknown 16.4
Red nucleus
nTPM: 23.9
2725 Female, age 75, unknown 29.9
1821 Female, age 72, unknown 27.6
1954 Female, age 42, unknown 27.4
1865 Male, age 51, unknown 26.2
2769 Male, age 72, unknown 24.7
2584 Male, age 75, left hemisphere 24.1
2823 Male, age 76, right hemisphere 23.6
1904 Male, age 53, unknown 23.2
2227 Male, age 72, unknown 22.6
2503 Female, age 72, unknown 21.8
2588 Male, age 74, left hemisphere 18.6
2785 Male, age 18, unknown 17.4
Substantia nigra
nTPM: 26.5
2699 Male, age 18, unknown 42.3
1916 Female, age 42, unknown 30.4
2665 Male, age 74, both hemispheres 28.4
2583 Male, age 75, right hemisphere 27.0
1851 Male, age 51, unknown 25.4
2590 Female, age 75, unknown 25.0
1941 Male, age 53, unknown 23.5
2241 Male, age 72, unknown 23.3
2409 Female, age 72, unknown 20.6
1889 Female, age 72, unknown 19.2
Superior colliculus
nTPM: 23.2
1995 Male, age 72, unknown 33.3
2664 Male, age 75, both hemispheres 27.2
1839 Male, age 51, unknown 25.6
1913 Female, age 42, unknown 25.5
2587 Male, age 74, left hemisphere 22.7
1796 Male, age 53, unknown 22.5
2668 Female, age 75, unknown 22.3
2087 Female, age 72, unknown 20.6
1895 Male, age 76, right hemisphere 16.3
2261 Male, age 18, unknown 15.9
Ventral tegmental area
nTPM: 26.6
2021 Male, age 53, unknown 34.2
1915 Female, age 42, unknown 29.5
1942 Male, age 51, unknown 26.5
2218 Male, age 76, both hemispheres 25.0
2410 Female, age 72, unknown 22.8
2223 Female, age 72, unknown 21.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.4
Samples: 183

Max nTPM: 94.6
Min nTPM: 2.8
Std nTPM: 15.8
Median nTPM: 21.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 94.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 80.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 78.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 76.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 68.6
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 65.9
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 64.1
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 62.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 61.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 57.2
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 57.1
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 107.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 107.4
FF:10158-103A5 76 years, female 107.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 36.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.9
Samples: 4

Max nTPM: 41.8
Min nTPM: 30.3
Sample A Female 39.9
Sample B Female 35.7
Sample C Male 30.3
Sample D Male 41.8
Midbrain
nTPM: 33.8
Samples: 4

Max nTPM: 57.6
Min nTPM: 21.5
Sample A Female 57.6
Sample B Female 30.9
Sample C Male 25.3
Sample D Male 21.5
Periaqueductal gray
nTPM: 31.8
Samples: 3

Max nTPM: 35.6
Min nTPM: 29.1
Sample B Female 30.8
Sample C Male 35.6
Sample D Male 29.1
Superior colliculi
nTPM: 35.3
Samples: 4

Max nTPM: 41.2
Min nTPM: 28.5
Sample A Female 40.2
Sample B Female 41.2
Sample C Male 28.5
Sample D Male 31.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 13.1
Min nTPM: 11.1
Sample A Male 13.1
Sample B Male 12.2
Sample C Female 11.1
Sample D Female 11.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.3
2689 Antisense, RP_040420_01_D04, Mouse strain C57BL/6J (56 days, male) 2.0
100144095 Antisense, RP_110421_01_F03, Mouse strain C57BL/6J (56 days, male) 0.7

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo