A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.6
nTPM
Monaco:
55.5
nTPM
Schmiedel:
78.3
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
HPA sample
nTPM
NK-cell nTPM: 9.6
Samples: 6
Max nTPM: 21.8
Min nTPM: 4.0
P10809_1013
4.1
P10809_1033
21.8
P10809_1052
8.8
P10809_1071
14.7
P10809_1093
4.0
P10809_1103
4.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
55.5
Monaco sample
nTPM
NK-cell nTPM: 55.6
Samples: 4
Max nTPM: 65.9
Min nTPM: 45.4
RHH5316_R3683
55.5
RHH5224_R3596
65.9
RHH5253_R3625
45.4
RHH5282_R3654
55.4
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
78.3
Schmiedel sample id
TPM
NK-cell TPM: 78.3
Samples: 90
Max TPM: 120.8
Min TPM: 48.8
NK_1
120.8
NK_2
116.5
NK_3
115.1
NK_4
115.1
NK_5
108.8
NK_6
108.5
NK_7
106.4
NK_8
105.6
NK_9
104.4
NK_10
101.0
NK_11
100.0
NK_12
98.5
NK_13
95.9
NK_14
94.7
NK_15
94.7
NK_16
94.6
NK_17
94.6
NK_18
93.4
NK_19
91.3
NK_20
90.8
NK_21
90.2
NK_22
89.2
NK_23
88.6
NK_24
88.4
NK_25
87.5
NK_26
86.4
NK_27
86.1
NK_28
85.8
NK_29
85.7
NK_30
85.4
NK_31
84.8
NK_32
84.4
NK_33
84.0
NK_34
83.6
NK_35
82.9
NK_36
81.4
NK_37
81.2
NK_38
79.6
NK_39
79.6
NK_40
79.4
NK_41
79.3
NK_42
79.2
NK_43
78.4
NK_44
78.3
NK_45
77.8
NK_46
76.6
NK_47
75.6
NK_48
75.6
NK_49
75.3
NK_50
74.4
NK_51
74.4
NK_52
73.4
NK_53
73.3
NK_54
73.0
NK_55
71.7
NK_56
71.2
NK_57
70.6
NK_58
70.2
NK_59
69.3
NK_60
67.9
NK_61
67.4
NK_62
67.2
NK_63
66.8
NK_64
66.8
NK_65
66.0
NK_66
65.7
NK_67
65.4
NK_68
65.2
NK_69
64.9
NK_70
64.7
NK_71
64.6
NK_72
63.6
NK_73
63.4
NK_74
62.6
NK_75
62.5
NK_76
61.1
NK_77
60.9
NK_78
60.4
NK_79
58.4
NK_80
57.9
NK_81
57.2
NK_82
56.7
NK_83
56.6
NK_84
55.8
NK_85
55.7
NK_86
55.3
NK_87
53.2
NK_88
52.9
NK_89
49.5
NK_90
48.8
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