A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.5
nTPM
Monaco:
30.8
nTPM
Schmiedel:
70.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.5
HPA sample
nTPM
Classical monocyte nTPM: 5.7
Samples: 6
Max nTPM: 8.0
Min nTPM: 3.2
P10809_1003
8.0
P10809_1020
6.0
P10809_1039
7.1
P10809_1058
6.2
P10809_1080
3.9
P10809_1107
3.2
Intermediate monocyte nTPM: 8.4
Samples: 6
Max nTPM: 14.1
Min nTPM: 4.1
P10809_1004
7.9
P10809_1023
8.7
P10809_1042
14.1
P10809_1061
10.6
P10809_1081
4.9
P10809_1108
4.1
Non-classical monocyte nTPM: 8.5
Samples: 5
Max nTPM: 23.0
Min nTPM: 3.2
P10809_1005
6.9
P10809_1053
5.1
P10809_1072
23.0
P10809_1082
3.2
P10809_1109
4.4
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.8
Monaco sample
nTPM
Classical monocyte nTPM: 30.8
Samples: 4
Max nTPM: 37.2
Min nTPM: 14.3
RHH5313_R3680
37.2
RHH5221_R3593
14.3
RHH5250_R3622
36.8
RHH5279_R3651
34.9
Intermediate monocyte nTPM: 18.8
Samples: 4
Max nTPM: 30.8
Min nTPM: 10.1
RHH5314_R3681
10.1
RHH5222_R3594
22.0
RHH5251_R3623
30.8
RHH5280_R3652
12.3
Non-classical monocyte nTPM: 29.0
Samples: 4
Max nTPM: 47.8
Min nTPM: 16.0
RHH5315_R3682
47.8
RHH5223_R3595
21.8
RHH5252_R3624
30.2
RHH5281_R3653
16.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
70.6
Schmiedel sample id
TPM
Classical monocyte TPM: 70.6
Samples: 91
Max TPM: 110.7
Min TPM: 45.2
MONOCYTES_1
110.7
MONOCYTES_2
99.5
MONOCYTES_3
96.2
MONOCYTES_4
95.2
MONOCYTES_5
93.4
MONOCYTES_6
91.3
MONOCYTES_7
91.0
MONOCYTES_8
88.6
MONOCYTES_9
87.6
MONOCYTES_10
86.8
MONOCYTES_11
85.9
MONOCYTES_12
84.2
MONOCYTES_13
82.6
MONOCYTES_14
82.3
MONOCYTES_15
82.0
MONOCYTES_16
80.7
MONOCYTES_17
80.5
MONOCYTES_18
80.1
MONOCYTES_19
79.9
MONOCYTES_20
79.6
MONOCYTES_21
79.6
MONOCYTES_22
79.4
MONOCYTES_23
79.2
MONOCYTES_24
79.1
MONOCYTES_25
78.0
MONOCYTES_26
76.7
MONOCYTES_27
75.9
MONOCYTES_28
75.6
MONOCYTES_29
75.6
MONOCYTES_30
75.3
MONOCYTES_31
75.2
MONOCYTES_32
73.7
MONOCYTES_33
73.5
MONOCYTES_34
73.4
MONOCYTES_35
72.8
MONOCYTES_36
72.4
MONOCYTES_37
72.0
MONOCYTES_38
71.8
MONOCYTES_39
71.1
MONOCYTES_40
70.6
MONOCYTES_41
70.2
MONOCYTES_42
70.0
MONOCYTES_43
70.0
MONOCYTES_44
69.1
MONOCYTES_45
68.9
MONOCYTES_46
68.6
MONOCYTES_47
68.5
MONOCYTES_48
68.1
MONOCYTES_49
67.8
MONOCYTES_50
67.6
MONOCYTES_51
67.3
MONOCYTES_52
67.2
MONOCYTES_53
67.2
MONOCYTES_54
66.3
MONOCYTES_55
66.3
MONOCYTES_56
66.2
MONOCYTES_57
66.0
MONOCYTES_58
65.9
MONOCYTES_59
65.9
MONOCYTES_60
65.6
MONOCYTES_61
65.1
MONOCYTES_62
64.5
MONOCYTES_63
64.4
MONOCYTES_64
64.0
MONOCYTES_65
63.9
MONOCYTES_66
63.9
MONOCYTES_67
63.6
MONOCYTES_68
63.6
MONOCYTES_69
63.0
MONOCYTES_70
62.7
MONOCYTES_71
62.1
MONOCYTES_72
62.0
MONOCYTES_73
61.3
MONOCYTES_74
61.2
MONOCYTES_75
60.8
MONOCYTES_76
59.7
MONOCYTES_77
59.1
MONOCYTES_78
59.0
MONOCYTES_79
58.7
MONOCYTES_80
56.2
MONOCYTES_81
56.0
MONOCYTES_82
55.6
MONOCYTES_83
53.5
MONOCYTES_84
53.4
MONOCYTES_85
53.2
MONOCYTES_86
53.0
MONOCYTES_87
52.8
MONOCYTES_88
52.7
MONOCYTES_89
51.6
MONOCYTES_90
50.6
MONOCYTES_91
45.2
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Non-classical monocyte TPM: 52.9
Samples: 90
Max TPM: 78.1
Min TPM: 36.0
M2_1
78.1
M2_2
76.0
M2_3
74.7
M2_4
71.9
M2_5
69.8
M2_6
69.5
M2_7
69.2
M2_8
68.3
M2_9
67.5
M2_10
67.0
M2_11
63.6
M2_12
63.4
M2_13
62.6
M2_14
61.7
M2_15
61.3
M2_16
61.3
M2_17
61.1
M2_18
61.0
M2_19
60.3
M2_20
60.2
M2_21
59.1
M2_22
58.4
M2_23
58.2
M2_24
58.2
M2_25
57.9
M2_26
57.0
M2_27
56.8
M2_28
56.5
M2_29
56.5
M2_30
56.4
M2_31
56.0
M2_32
55.5
M2_33
55.3
M2_34
55.3
M2_35
55.0
M2_36
54.9
M2_37
53.8
M2_38
53.6
M2_39
53.5
M2_40
53.4
M2_41
52.9
M2_42
52.8
M2_43
52.7
M2_44
51.9
M2_45
51.8
M2_46
51.7
M2_47
50.8
M2_48
50.7
M2_49
50.2
M2_50
50.0
M2_51
50.0
M2_52
50.0
M2_53
49.6
M2_54
49.6
M2_55
49.5
M2_56
49.3
M2_57
48.7
M2_58
48.6
M2_59
48.6
M2_60
48.5
M2_61
48.3
M2_62
48.1
M2_63
47.7
M2_64
47.6
M2_65
47.4
M2_66
47.4
M2_67
47.3
M2_68
46.6
M2_69
46.5
M2_70
46.5
M2_71
45.7
M2_72
45.5
M2_73
44.8
M2_74
44.6
M2_75
44.0
M2_76
43.7
M2_77
42.9
M2_78
41.7
M2_79
41.0
M2_80
40.9
M2_81
40.9
M2_82
40.4
M2_83
40.1
M2_84
39.9
M2_85
39.8
M2_86
39.6
M2_87
39.3
M2_88
38.6
M2_89
37.5
M2_90
36.0
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