A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
28.4
nTPM
Monaco:
99.1
nTPM
Schmiedel:
95.4
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.4
HPA sample
nTPM
NK-cell nTPM: 28.4
Samples: 6
Max nTPM: 40.9
Min nTPM: 21.1
P10809_1013
30.4
P10809_1033
40.9
P10809_1052
25.5
P10809_1071
22.3
P10809_1093
30.2
P10809_1103
21.1
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
99.1
Monaco sample
nTPM
NK-cell nTPM: 99.1
Samples: 4
Max nTPM: 116.6
Min nTPM: 82.3
RHH5316_R3683
88.1
RHH5224_R3596
82.3
RHH5253_R3625
116.6
RHH5282_R3654
109.5
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
95.4
Schmiedel sample id
TPM
NK-cell TPM: 95.4
Samples: 90
Max TPM: 139.7
Min TPM: 71.8
NK_1
139.7
NK_2
135.2
NK_3
133.9
NK_4
132.0
NK_5
124.2
NK_6
119.7
NK_7
118.5
NK_8
116.5
NK_9
115.3
NK_10
113.9
NK_11
113.5
NK_12
113.3
NK_13
112.0
NK_14
111.7
NK_15
110.9
NK_16
110.6
NK_17
109.4
NK_18
109.2
NK_19
108.8
NK_20
107.9
NK_21
103.2
NK_22
103.1
NK_23
102.4
NK_24
101.6
NK_25
101.5
NK_26
101.4
NK_27
100.8
NK_28
100.7
NK_29
99.8
NK_30
98.4
NK_31
98.4
NK_32
98.0
NK_33
98.0
NK_34
97.2
NK_35
96.4
NK_36
96.3
NK_37
96.1
NK_38
96.0
NK_39
95.8
NK_40
95.2
NK_41
94.3
NK_42
93.7
NK_43
93.1
NK_44
93.0
NK_45
92.9
NK_46
92.3
NK_47
91.8
NK_48
91.2
NK_49
91.1
NK_50
91.0
NK_51
90.5
NK_52
90.3
NK_53
90.1
NK_54
89.6
NK_55
89.5
NK_56
88.9
NK_57
88.8
NK_58
88.5
NK_59
88.3
NK_60
88.2
NK_61
88.1
NK_62
88.1
NK_63
88.0
NK_64
87.4
NK_65
87.2
NK_66
87.0
NK_67
86.0
NK_68
84.5
NK_69
84.4
NK_70
83.4
NK_71
82.7
NK_72
82.4
NK_73
82.2
NK_74
82.1
NK_75
81.4
NK_76
81.2
NK_77
80.8
NK_78
80.1
NK_79
80.1
NK_80
80.0
NK_81
79.5
NK_82
78.8
NK_83
78.5
NK_84
78.0
NK_85
76.7
NK_86
74.8
NK_87
73.7
NK_88
73.5
NK_89
73.0
NK_90
71.8
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