A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.0
nTPM
Monaco:
21.8
nTPM
Schmiedel:
90.7
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.0
HPA sample
nTPM
Memory B-cell nTPM: 3.9
Samples: 6
Max nTPM: 5.1
Min nTPM: 3.0
P10809_1017
4.1
P10809_1025
3.0
P10809_1044
5.1
P10809_1063
3.3
P10809_1092
4.1
P10809_1105
3.7
Naive B-cell nTPM: 5.0
Samples: 6
Max nTPM: 6.6
Min nTPM: 3.3
P10809_1011
6.2
P10809_1029
4.1
P10809_1048
3.3
P10809_1067
6.6
P10809_1091
5.4
P10809_1104
4.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
21.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 18.0
Samples: 4
Max nTPM: 24.9
Min nTPM: 10.6
RHH5310_R3677
10.6
RHH5218_R3590
24.9
RHH5247_R3619
13.8
RHH5276_R3648
22.5
Naive B-cell nTPM: 21.8
Samples: 4
Max nTPM: 27.9
Min nTPM: 17.2
RHH5308_R3675
17.2
RHH5216_R3588
17.5
RHH5245_R3617
24.4
RHH5274_R3646
27.9
Non-switched memory B-cell nTPM: 18.3
Samples: 4
Max nTPM: 21.6
Min nTPM: 13.0
RHH5309_R3676
13.0
RHH5217_R3589
21.6
RHH5246_R3618
21.0
RHH5275_R3647
17.4
Plasmablast nTPM: 10.5
Samples: 4
Max nTPM: 15.8
Min nTPM: 6.3
RHH5312_R3679
11.7
RHH5220_R3592
6.3
RHH5249_R3621
8.2
RHH5278_R3650
15.8
Switched memory B-cell nTPM: 19.8
Samples: 4
Max nTPM: 25.6
Min nTPM: 10.9
RHH5311_R3678
10.9
RHH5219_R3591
24.2
RHH5248_R3620
18.6
RHH5277_R3649
25.6
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.7
Schmiedel sample id
TPM
Naive B-cell TPM: 90.7
Samples: 91
Max TPM: 152.6
Min TPM: 62.3
B_CELL_NAIVE_1
152.6
B_CELL_NAIVE_2
143.2
B_CELL_NAIVE_3
141.1
B_CELL_NAIVE_4
129.1
B_CELL_NAIVE_5
124.8
B_CELL_NAIVE_6
117.5
B_CELL_NAIVE_7
116.6
B_CELL_NAIVE_8
111.8
B_CELL_NAIVE_9
111.2
B_CELL_NAIVE_10
110.6
B_CELL_NAIVE_11
107.5
B_CELL_NAIVE_12
106.3
B_CELL_NAIVE_13
104.9
B_CELL_NAIVE_14
104.1
B_CELL_NAIVE_15
103.4
B_CELL_NAIVE_16
103.2
B_CELL_NAIVE_17
102.8
B_CELL_NAIVE_18
102.4
B_CELL_NAIVE_19
102.3
B_CELL_NAIVE_20
101.8
B_CELL_NAIVE_21
101.5
B_CELL_NAIVE_22
101.2
B_CELL_NAIVE_23
101.1
B_CELL_NAIVE_24
100.3
B_CELL_NAIVE_25
100.0
B_CELL_NAIVE_26
99.9
B_CELL_NAIVE_27
97.4
B_CELL_NAIVE_28
96.2
B_CELL_NAIVE_29
94.8
B_CELL_NAIVE_30
94.7
B_CELL_NAIVE_31
94.2
B_CELL_NAIVE_32
93.5
B_CELL_NAIVE_33
93.0
B_CELL_NAIVE_34
92.3
B_CELL_NAIVE_35
92.1
B_CELL_NAIVE_36
92.1
B_CELL_NAIVE_37
91.8
B_CELL_NAIVE_38
91.7
B_CELL_NAIVE_39
90.7
B_CELL_NAIVE_40
90.0
B_CELL_NAIVE_41
89.6
B_CELL_NAIVE_42
89.4
B_CELL_NAIVE_43
87.9
B_CELL_NAIVE_44
87.7
B_CELL_NAIVE_45
87.4
B_CELL_NAIVE_46
86.4
B_CELL_NAIVE_47
85.9
B_CELL_NAIVE_48
85.8
B_CELL_NAIVE_49
85.7
B_CELL_NAIVE_50
85.5
B_CELL_NAIVE_51
85.5
B_CELL_NAIVE_52
85.1
B_CELL_NAIVE_53
84.8
B_CELL_NAIVE_54
84.7
B_CELL_NAIVE_55
84.5
B_CELL_NAIVE_56
84.1
B_CELL_NAIVE_57
83.8
B_CELL_NAIVE_58
83.7
B_CELL_NAIVE_59
83.7
B_CELL_NAIVE_60
83.7
B_CELL_NAIVE_61
83.0
B_CELL_NAIVE_62
81.5
B_CELL_NAIVE_63
81.1
B_CELL_NAIVE_64
80.7
B_CELL_NAIVE_65
80.7
B_CELL_NAIVE_66
80.6
B_CELL_NAIVE_67
80.1
B_CELL_NAIVE_68
80.0
B_CELL_NAIVE_69
79.8
B_CELL_NAIVE_70
79.3
B_CELL_NAIVE_71
79.2
B_CELL_NAIVE_72
78.8
B_CELL_NAIVE_73
78.3
B_CELL_NAIVE_74
77.5
B_CELL_NAIVE_75
76.7
B_CELL_NAIVE_76
76.3
B_CELL_NAIVE_77
75.7
B_CELL_NAIVE_78
75.5
B_CELL_NAIVE_79
75.2
B_CELL_NAIVE_80
75.1
B_CELL_NAIVE_81
74.9
B_CELL_NAIVE_82
73.1
B_CELL_NAIVE_83
72.2
B_CELL_NAIVE_84
72.1
B_CELL_NAIVE_85
72.0
B_CELL_NAIVE_86
68.6
B_CELL_NAIVE_87
68.3
B_CELL_NAIVE_88
67.2
B_CELL_NAIVE_89
66.0
B_CELL_NAIVE_90
64.3
B_CELL_NAIVE_91
62.3
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