A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.0
nTPM
Monaco:
22.4
nTPM
Schmiedel:
67.7
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.0
HPA sample
nTPM
Classical monocyte nTPM: 5.0
Samples: 6
Max nTPM: 6.9
Min nTPM: 3.7
P10809_1003
4.7
P10809_1020
4.2
P10809_1039
3.7
P10809_1058
6.9
P10809_1080
6.6
P10809_1107
4.1
Intermediate monocyte nTPM: 3.2
Samples: 6
Max nTPM: 5.2
Min nTPM: 1.2
P10809_1004
2.3
P10809_1023
1.2
P10809_1042
2.9
P10809_1061
5.2
P10809_1081
4.9
P10809_1108
2.4
Non-classical monocyte nTPM: 4.1
Samples: 5
Max nTPM: 6.7
Min nTPM: 2.2
P10809_1005
2.8
P10809_1053
3.6
P10809_1072
6.7
P10809_1082
5.0
P10809_1109
2.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.4
Monaco sample
nTPM
Classical monocyte nTPM: 22.4
Samples: 4
Max nTPM: 25.8
Min nTPM: 18.4
RHH5313_R3680
20.3
RHH5221_R3593
18.4
RHH5250_R3622
25.2
RHH5279_R3651
25.8
Intermediate monocyte nTPM: 19.0
Samples: 4
Max nTPM: 21.4
Min nTPM: 15.9
RHH5314_R3681
18.7
RHH5222_R3594
15.9
RHH5251_R3623
21.4
RHH5280_R3652
19.9
Non-classical monocyte nTPM: 19.8
Samples: 4
Max nTPM: 24.1
Min nTPM: 14.9
RHH5315_R3682
17.1
RHH5223_R3595
14.9
RHH5252_R3624
24.1
RHH5281_R3653
23.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
67.7
Schmiedel sample id
TPM
Classical monocyte TPM: 67.7
Samples: 91
Max TPM: 89.3
Min TPM: 50.8
MONOCYTES_1
89.3
MONOCYTES_2
82.5
MONOCYTES_3
81.8
MONOCYTES_4
81.7
MONOCYTES_5
79.7
MONOCYTES_6
79.7
MONOCYTES_7
79.6
MONOCYTES_8
78.6
MONOCYTES_9
78.4
MONOCYTES_10
78.1
MONOCYTES_11
78.0
MONOCYTES_12
78.0
MONOCYTES_13
77.8
MONOCYTES_14
77.7
MONOCYTES_15
77.0
MONOCYTES_16
76.9
MONOCYTES_17
76.7
MONOCYTES_18
76.6
MONOCYTES_19
75.9
MONOCYTES_20
75.2
MONOCYTES_21
75.0
MONOCYTES_22
74.8
MONOCYTES_23
74.1
MONOCYTES_24
73.5
MONOCYTES_25
73.2
MONOCYTES_26
72.9
MONOCYTES_27
72.4
MONOCYTES_28
72.2
MONOCYTES_29
72.2
MONOCYTES_30
72.1
MONOCYTES_31
72.0
MONOCYTES_32
71.9
MONOCYTES_33
71.5
MONOCYTES_34
71.5
MONOCYTES_35
71.3
MONOCYTES_36
71.2
MONOCYTES_37
70.9
MONOCYTES_38
70.2
MONOCYTES_39
70.0
MONOCYTES_40
69.6
MONOCYTES_41
69.5
MONOCYTES_42
69.5
MONOCYTES_43
69.2
MONOCYTES_44
69.1
MONOCYTES_45
68.5
MONOCYTES_46
68.2
MONOCYTES_47
67.6
MONOCYTES_48
67.6
MONOCYTES_49
66.8
MONOCYTES_50
66.7
MONOCYTES_51
66.6
MONOCYTES_52
66.6
MONOCYTES_53
65.8
MONOCYTES_54
65.7
MONOCYTES_55
65.5
MONOCYTES_56
64.6
MONOCYTES_57
64.4
MONOCYTES_58
64.2
MONOCYTES_59
64.0
MONOCYTES_60
63.7
MONOCYTES_61
63.5
MONOCYTES_62
63.4
MONOCYTES_63
63.3
MONOCYTES_64
63.0
MONOCYTES_65
62.7
MONOCYTES_66
62.4
MONOCYTES_67
62.0
MONOCYTES_68
61.1
MONOCYTES_69
60.4
MONOCYTES_70
60.1
MONOCYTES_71
59.9
MONOCYTES_72
58.5
MONOCYTES_73
58.4
MONOCYTES_74
58.1
MONOCYTES_75
58.0
MONOCYTES_76
57.7
MONOCYTES_77
57.3
MONOCYTES_78
57.3
MONOCYTES_79
57.3
MONOCYTES_80
56.9
MONOCYTES_81
56.9
MONOCYTES_82
56.7
MONOCYTES_83
56.5
MONOCYTES_84
56.2
MONOCYTES_85
56.2
MONOCYTES_86
55.9
MONOCYTES_87
55.9
MONOCYTES_88
54.7
MONOCYTES_89
53.8
MONOCYTES_90
53.6
MONOCYTES_91
50.8
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Non-classical monocyte TPM: 60.5
Samples: 90
Max TPM: 91.1
Min TPM: 35.7
M2_1
91.1
M2_2
85.4
M2_3
85.1
M2_4
82.4
M2_5
82.1
M2_6
81.1
M2_7
79.7
M2_8
78.5
M2_9
77.5
M2_10
77.3
M2_11
73.7
M2_12
73.7
M2_13
73.5
M2_14
72.3
M2_15
71.5
M2_16
71.1
M2_17
70.2
M2_18
69.7
M2_19
68.9
M2_20
68.9
M2_21
68.9
M2_22
68.0
M2_23
68.0
M2_24
67.4
M2_25
67.2
M2_26
67.0
M2_27
66.1
M2_28
64.6
M2_29
64.6
M2_30
64.1
M2_31
63.7
M2_32
63.6
M2_33
63.0
M2_34
62.3
M2_35
61.9
M2_36
61.4
M2_37
61.2
M2_38
61.1
M2_39
60.6
M2_40
59.6
M2_41
59.3
M2_42
59.0
M2_43
58.9
M2_44
58.7
M2_45
58.4
M2_46
58.2
M2_47
58.2
M2_48
57.8
M2_49
57.8
M2_50
57.3
M2_51
57.0
M2_52
56.1
M2_53
56.0
M2_54
55.9
M2_55
55.8
M2_56
55.6
M2_57
55.5
M2_58
55.1
M2_59
54.9
M2_60
54.4
M2_61
54.4
M2_62
54.3
M2_63
54.2
M2_64
54.1
M2_65
54.0
M2_66
53.7
M2_67
53.5
M2_68
53.5
M2_69
53.4
M2_70
53.3
M2_71
53.1
M2_72
51.7
M2_73
50.3
M2_74
50.2
M2_75
50.0
M2_76
49.1
M2_77
49.1
M2_78
49.0
M2_79
48.8
M2_80
48.7
M2_81
48.7
M2_82
48.5
M2_83
48.2
M2_84
45.4
M2_85
45.4
M2_86
44.4
M2_87
44.1
M2_88
43.6
M2_89
41.1
M2_90
35.7
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