A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.3
nTPM
Monaco:
9.3
nTPM
Schmiedel:
73.1
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.3
HPA sample
nTPM
Memory B-cell nTPM: 6.4
Samples: 6
Max nTPM: 9.7
Min nTPM: 3.2
P10809_1017
6.9
P10809_1025
9.7
P10809_1044
3.2
P10809_1063
5.7
P10809_1092
6.9
P10809_1105
5.7
Naive B-cell nTPM: 7.3
Samples: 6
Max nTPM: 20.6
Min nTPM: 3.5
P10809_1011
3.6
P10809_1029
5.8
P10809_1048
20.6
P10809_1067
3.7
P10809_1091
3.5
P10809_1104
6.4
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.3
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 4.7
Samples: 4
Max nTPM: 7.7
Min nTPM: 0.9
RHH5310_R3677
3.4
RHH5218_R3590
6.9
RHH5247_R3619
0.9
RHH5276_R3648
7.7
Naive B-cell nTPM: 5.5
Samples: 4
Max nTPM: 9.5
Min nTPM: 1.3
RHH5308_R3675
8.0
RHH5216_R3588
1.3
RHH5245_R3617
9.5
RHH5274_R3646
3.3
Non-switched memory B-cell nTPM: 5.8
Samples: 4
Max nTPM: 12.7
Min nTPM: 1.0
RHH5309_R3676
7.1
RHH5217_R3589
1.0
RHH5246_R3618
2.5
RHH5275_R3647
12.7
Plasmablast nTPM: 9.3
Samples: 4
Max nTPM: 14.1
Min nTPM: 1.3
RHH5312_R3679
1.3
RHH5220_R3592
14.1
RHH5249_R3621
13.4
RHH5278_R3650
8.5
Switched memory B-cell nTPM: 7.8
Samples: 4
Max nTPM: 13.2
Min nTPM: 3.1
RHH5311_R3678
3.6
RHH5219_R3591
13.2
RHH5248_R3620
3.1
RHH5277_R3649
11.2
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
73.1
Schmiedel sample id
TPM
Naive B-cell TPM: 73.1
Samples: 91
Max TPM: 127.6
Min TPM: 34.2
B_CELL_NAIVE_1
127.6
B_CELL_NAIVE_2
111.7
B_CELL_NAIVE_3
106.4
B_CELL_NAIVE_4
102.8
B_CELL_NAIVE_5
101.5
B_CELL_NAIVE_6
100.2
B_CELL_NAIVE_7
96.7
B_CELL_NAIVE_8
96.6
B_CELL_NAIVE_9
95.7
B_CELL_NAIVE_10
88.3
B_CELL_NAIVE_11
87.6
B_CELL_NAIVE_12
86.5
B_CELL_NAIVE_13
86.4
B_CELL_NAIVE_14
85.1
B_CELL_NAIVE_15
84.3
B_CELL_NAIVE_16
84.3
B_CELL_NAIVE_17
83.1
B_CELL_NAIVE_18
82.3
B_CELL_NAIVE_19
82.2
B_CELL_NAIVE_20
80.8
B_CELL_NAIVE_21
80.2
B_CELL_NAIVE_22
79.8
B_CELL_NAIVE_23
79.3
B_CELL_NAIVE_24
78.6
B_CELL_NAIVE_25
78.4
B_CELL_NAIVE_26
78.3
B_CELL_NAIVE_27
78.3
B_CELL_NAIVE_28
77.4
B_CELL_NAIVE_29
76.8
B_CELL_NAIVE_30
76.6
B_CELL_NAIVE_31
76.6
B_CELL_NAIVE_32
76.3
B_CELL_NAIVE_33
75.6
B_CELL_NAIVE_34
75.6
B_CELL_NAIVE_35
75.5
B_CELL_NAIVE_36
74.2
B_CELL_NAIVE_37
74.2
B_CELL_NAIVE_38
73.9
B_CELL_NAIVE_39
73.6
B_CELL_NAIVE_40
73.4
B_CELL_NAIVE_41
73.1
B_CELL_NAIVE_42
73.1
B_CELL_NAIVE_43
72.9
B_CELL_NAIVE_44
72.6
B_CELL_NAIVE_45
72.1
B_CELL_NAIVE_46
71.9
B_CELL_NAIVE_47
71.8
B_CELL_NAIVE_48
70.8
B_CELL_NAIVE_49
69.7
B_CELL_NAIVE_50
69.5
B_CELL_NAIVE_51
69.4
B_CELL_NAIVE_52
69.3
B_CELL_NAIVE_53
68.3
B_CELL_NAIVE_54
68.2
B_CELL_NAIVE_55
68.0
B_CELL_NAIVE_56
67.7
B_CELL_NAIVE_57
67.6
B_CELL_NAIVE_58
67.5
B_CELL_NAIVE_59
67.4
B_CELL_NAIVE_60
67.4
B_CELL_NAIVE_61
67.0
B_CELL_NAIVE_62
67.0
B_CELL_NAIVE_63
66.4
B_CELL_NAIVE_64
66.0
B_CELL_NAIVE_65
65.1
B_CELL_NAIVE_66
64.9
B_CELL_NAIVE_67
64.7
B_CELL_NAIVE_68
64.6
B_CELL_NAIVE_69
63.8
B_CELL_NAIVE_70
63.0
B_CELL_NAIVE_71
62.7
B_CELL_NAIVE_72
62.3
B_CELL_NAIVE_73
62.0
B_CELL_NAIVE_74
61.9
B_CELL_NAIVE_75
61.7
B_CELL_NAIVE_76
61.7
B_CELL_NAIVE_77
61.5
B_CELL_NAIVE_78
61.4
B_CELL_NAIVE_79
59.7
B_CELL_NAIVE_80
59.5
B_CELL_NAIVE_81
59.4
B_CELL_NAIVE_82
59.3
B_CELL_NAIVE_83
59.2
B_CELL_NAIVE_84
58.2
B_CELL_NAIVE_85
57.1
B_CELL_NAIVE_86
56.9
B_CELL_NAIVE_87
56.8
B_CELL_NAIVE_88
56.1
B_CELL_NAIVE_89
45.3
B_CELL_NAIVE_90
39.9
B_CELL_NAIVE_91
34.2
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