A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
9.6
nTPM
Monaco:
10.5
nTPM
Schmiedel:
90.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
9.6
HPA sample
nTPM
Classical monocyte nTPM: 7.7
Samples: 6
Max nTPM: 12.3
Min nTPM: 4.4
P10809_1003
8.4
P10809_1020
12.3
P10809_1039
10.9
P10809_1058
4.4
P10809_1080
5.5
P10809_1107
4.6
Intermediate monocyte nTPM: 9.6
Samples: 6
Max nTPM: 25.5
Min nTPM: 3.8
P10809_1004
6.9
P10809_1023
25.5
P10809_1042
7.9
P10809_1061
8.6
P10809_1081
4.7
P10809_1108
3.8
Non-classical monocyte nTPM: 5.7
Samples: 5
Max nTPM: 10.9
Min nTPM: 0.0
P10809_1005
7.1
P10809_1053
10.9
P10809_1072
0.0
P10809_1082
5.7
P10809_1109
4.7
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
10.5
Monaco sample
nTPM
Classical monocyte nTPM: 8.3
Samples: 4
Max nTPM: 14.8
Min nTPM: 3.5
RHH5313_R3680
6.3
RHH5221_R3593
14.8
RHH5250_R3622
8.6
RHH5279_R3651
3.5
Intermediate monocyte nTPM: 10.5
Samples: 4
Max nTPM: 16.0
Min nTPM: 6.7
RHH5314_R3681
6.7
RHH5222_R3594
12.0
RHH5251_R3623
16.0
RHH5280_R3652
7.4
Non-classical monocyte nTPM: 8.8
Samples: 4
Max nTPM: 18.6
Min nTPM: 3.7
RHH5315_R3682
6.0
RHH5223_R3595
7.0
RHH5252_R3624
18.6
RHH5281_R3653
3.7
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
90.3
Schmiedel sample id
TPM
Classical monocyte TPM: 43.6
Samples: 91
Max TPM: 63.9
Min TPM: 28.5
MONOCYTES_1
63.9
MONOCYTES_2
60.8
MONOCYTES_3
55.4
MONOCYTES_4
54.9
MONOCYTES_5
54.6
MONOCYTES_6
54.2
MONOCYTES_7
54.2
MONOCYTES_8
53.4
MONOCYTES_9
53.3
MONOCYTES_10
52.8
MONOCYTES_11
52.4
MONOCYTES_12
52.4
MONOCYTES_13
52.3
MONOCYTES_14
52.0
MONOCYTES_15
51.6
MONOCYTES_16
50.9
MONOCYTES_17
50.5
MONOCYTES_18
49.8
MONOCYTES_19
49.8
MONOCYTES_20
49.3
MONOCYTES_21
49.1
MONOCYTES_22
49.0
MONOCYTES_23
49.0
MONOCYTES_24
48.8
MONOCYTES_25
48.6
MONOCYTES_26
48.6
MONOCYTES_27
48.0
MONOCYTES_28
48.0
MONOCYTES_29
47.1
MONOCYTES_30
46.6
MONOCYTES_31
46.5
MONOCYTES_32
46.2
MONOCYTES_33
45.9
MONOCYTES_34
45.4
MONOCYTES_35
45.2
MONOCYTES_36
45.1
MONOCYTES_37
44.7
MONOCYTES_38
44.6
MONOCYTES_39
44.6
MONOCYTES_40
44.3
MONOCYTES_41
43.7
MONOCYTES_42
43.6
MONOCYTES_43
43.2
MONOCYTES_44
42.6
MONOCYTES_45
42.6
MONOCYTES_46
42.3
MONOCYTES_47
42.1
MONOCYTES_48
42.1
MONOCYTES_49
42.1
MONOCYTES_50
42.0
MONOCYTES_51
41.9
MONOCYTES_52
41.8
MONOCYTES_53
41.5
MONOCYTES_54
41.4
MONOCYTES_55
41.4
MONOCYTES_56
41.1
MONOCYTES_57
41.0
MONOCYTES_58
40.8
MONOCYTES_59
40.7
MONOCYTES_60
40.2
MONOCYTES_61
40.0
MONOCYTES_62
39.6
MONOCYTES_63
39.6
MONOCYTES_64
39.5
MONOCYTES_65
39.4
MONOCYTES_66
39.4
MONOCYTES_67
38.9
MONOCYTES_68
38.7
MONOCYTES_69
38.6
MONOCYTES_70
38.3
MONOCYTES_71
38.1
MONOCYTES_72
38.0
MONOCYTES_73
37.7
MONOCYTES_74
37.5
MONOCYTES_75
37.3
MONOCYTES_76
37.2
MONOCYTES_77
37.0
MONOCYTES_78
36.7
MONOCYTES_79
36.4
MONOCYTES_80
36.1
MONOCYTES_81
36.1
MONOCYTES_82
35.8
MONOCYTES_83
35.6
MONOCYTES_84
34.9
MONOCYTES_85
33.7
MONOCYTES_86
33.6
MONOCYTES_87
31.9
MONOCYTES_88
31.3
MONOCYTES_89
29.9
MONOCYTES_90
29.5
MONOCYTES_91
28.5
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Non-classical monocyte TPM: 90.3
Samples: 90
Max TPM: 133.0
Min TPM: 45.0
M2_1
133.0
M2_2
130.7
M2_3
124.5
M2_4
122.0
M2_5
121.7
M2_6
120.7
M2_7
116.6
M2_8
115.8
M2_9
114.4
M2_10
111.3
M2_11
109.5
M2_12
108.8
M2_13
106.9
M2_14
105.1
M2_15
103.5
M2_16
102.1
M2_17
101.7
M2_18
101.0
M2_19
100.4
M2_20
100.1
M2_21
100.0
M2_22
99.5
M2_23
98.6
M2_24
98.6
M2_25
97.8
M2_26
97.2
M2_27
97.0
M2_28
96.9
M2_29
96.3
M2_30
95.8
M2_31
95.8
M2_32
94.4
M2_33
94.1
M2_34
91.1
M2_35
91.0
M2_36
90.5
M2_37
90.3
M2_38
90.1
M2_39
89.8
M2_40
89.6
M2_41
89.2
M2_42
88.5
M2_43
88.5
M2_44
87.9
M2_45
87.8
M2_46
87.0
M2_47
86.3
M2_48
86.2
M2_49
85.8
M2_50
85.4
M2_51
85.1
M2_52
85.0
M2_53
84.9
M2_54
84.7
M2_55
84.5
M2_56
84.2
M2_57
84.1
M2_58
84.0
M2_59
83.7
M2_60
83.0
M2_61
83.0
M2_62
81.2
M2_63
81.1
M2_64
81.0
M2_65
81.0
M2_66
80.7
M2_67
80.2
M2_68
80.0
M2_69
79.4
M2_70
78.5
M2_71
78.3
M2_72
77.9
M2_73
77.5
M2_74
77.4
M2_75
77.2
M2_76
77.0
M2_77
76.7
M2_78
76.5
M2_79
76.1
M2_80
75.5
M2_81
74.2
M2_82
74.0
M2_83
73.7
M2_84
72.7
M2_85
71.8
M2_86
71.7
M2_87
71.1
M2_88
70.4
M2_89
66.1
M2_90
45.0
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