A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
13.4
nTPM
Monaco:
30.7
nTPM
Schmiedel:
48.5
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.4
HPA sample
nTPM
NK-cell nTPM: 13.5
Samples: 6
Max nTPM: 22.3
Min nTPM: 0.1
P10809_1013
10.1
P10809_1033
12.5
P10809_1052
14.9
P10809_1071
20.9
P10809_1093
0.1
P10809_1103
22.3
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
30.7
Monaco sample
nTPM
NK-cell nTPM: 30.7
Samples: 4
Max nTPM: 37.2
Min nTPM: 22.9
RHH5316_R3683
30.1
RHH5224_R3596
32.6
RHH5253_R3625
22.9
RHH5282_R3654
37.2
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
48.5
Schmiedel sample id
TPM
NK-cell TPM: 48.5
Samples: 90
Max TPM: 84.1
Min TPM: 20.5
NK_1
84.1
NK_2
68.9
NK_3
67.9
NK_4
66.8
NK_5
65.3
NK_6
64.9
NK_7
64.8
NK_8
64.7
NK_9
63.7
NK_10
62.6
NK_11
62.0
NK_12
61.5
NK_13
59.2
NK_14
58.7
NK_15
58.4
NK_16
58.1
NK_17
58.0
NK_18
57.9
NK_19
57.3
NK_20
57.3
NK_21
57.2
NK_22
56.6
NK_23
56.4
NK_24
54.9
NK_25
54.5
NK_26
54.2
NK_27
52.7
NK_28
52.5
NK_29
52.4
NK_30
52.3
NK_31
52.2
NK_32
51.9
NK_33
51.8
NK_34
51.6
NK_35
50.2
NK_36
50.2
NK_37
49.6
NK_38
49.5
NK_39
49.4
NK_40
48.6
NK_41
48.5
NK_42
48.1
NK_43
48.0
NK_44
47.5
NK_45
47.5
NK_46
47.1
NK_47
47.0
NK_48
46.9
NK_49
46.6
NK_50
46.6
NK_51
46.5
NK_52
46.1
NK_53
45.8
NK_54
45.6
NK_55
45.5
NK_56
45.5
NK_57
45.2
NK_58
45.1
NK_59
44.5
NK_60
44.3
NK_61
44.2
NK_62
44.1
NK_63
43.6
NK_64
42.4
NK_65
42.1
NK_66
42.0
NK_67
41.5
NK_68
41.4
NK_69
41.3
NK_70
40.7
NK_71
40.6
NK_72
40.1
NK_73
40.0
NK_74
40.0
NK_75
39.1
NK_76
38.5
NK_77
38.4
NK_78
38.2
NK_79
38.0
NK_80
37.7
NK_81
37.1
NK_82
36.0
NK_83
35.9
NK_84
33.0
NK_85
32.7
NK_86
32.6
NK_87
29.8
NK_88
28.0
NK_89
25.3
NK_90
20.5
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