A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
19.7
nTPM
Monaco:
35.1
nTPM
Schmiedel:
42.2
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
19.7
HPA sample
nTPM
Classical monocyte nTPM: 15.3
Samples: 6
Max nTPM: 22.0
Min nTPM: 12.3
P10809_1003
13.7
P10809_1020
15.1
P10809_1039
22.0
P10809_1058
12.3
P10809_1080
15.3
P10809_1107
13.6
Intermediate monocyte nTPM: 19.7
Samples: 6
Max nTPM: 30.3
Min nTPM: 13.6
P10809_1004
17.1
P10809_1023
30.3
P10809_1042
20.9
P10809_1061
18.0
P10809_1081
13.6
P10809_1108
18.0
Non-classical monocyte nTPM: 18.9
Samples: 5
Max nTPM: 32.3
Min nTPM: 0.0
P10809_1005
20.3
P10809_1053
32.3
P10809_1072
0.0
P10809_1082
14.8
P10809_1109
27.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
35.1
Monaco sample
nTPM
Classical monocyte nTPM: 30.4
Samples: 4
Max nTPM: 39.3
Min nTPM: 23.9
RHH5313_R3680
23.9
RHH5221_R3593
39.3
RHH5250_R3622
33.5
RHH5279_R3651
24.9
Intermediate monocyte nTPM: 33.6
Samples: 4
Max nTPM: 38.7
Min nTPM: 24.0
RHH5314_R3681
38.7
RHH5222_R3594
38.4
RHH5251_R3623
24.0
RHH5280_R3652
33.1
Non-classical monocyte nTPM: 35.1
Samples: 4
Max nTPM: 42.0
Min nTPM: 26.9
RHH5315_R3682
38.3
RHH5223_R3595
33.2
RHH5252_R3624
42.0
RHH5281_R3653
26.9
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.2
Schmiedel sample id
TPM
Classical monocyte TPM: 28.9
Samples: 91
Max TPM: 43.1
Min TPM: 16.6
MONOCYTES_1
43.1
MONOCYTES_2
38.2
MONOCYTES_3
37.5
MONOCYTES_4
36.8
MONOCYTES_5
35.1
MONOCYTES_6
34.8
MONOCYTES_7
34.3
MONOCYTES_8
33.7
MONOCYTES_9
33.6
MONOCYTES_10
33.4
MONOCYTES_11
33.2
MONOCYTES_12
32.7
MONOCYTES_13
32.7
MONOCYTES_14
32.5
MONOCYTES_15
32.5
MONOCYTES_16
32.4
MONOCYTES_17
32.4
MONOCYTES_18
32.3
MONOCYTES_19
31.8
MONOCYTES_20
31.8
MONOCYTES_21
31.8
MONOCYTES_22
31.7
MONOCYTES_23
31.7
MONOCYTES_24
31.6
MONOCYTES_25
31.6
MONOCYTES_26
31.4
MONOCYTES_27
30.8
MONOCYTES_28
30.7
MONOCYTES_29
30.7
MONOCYTES_30
30.3
MONOCYTES_31
30.1
MONOCYTES_32
29.9
MONOCYTES_33
29.6
MONOCYTES_34
29.6
MONOCYTES_35
29.6
MONOCYTES_36
29.5
MONOCYTES_37
29.4
MONOCYTES_38
29.4
MONOCYTES_39
29.3
MONOCYTES_40
29.3
MONOCYTES_41
29.2
MONOCYTES_42
29.2
MONOCYTES_43
28.8
MONOCYTES_44
28.8
MONOCYTES_45
28.7
MONOCYTES_46
28.7
MONOCYTES_47
28.7
MONOCYTES_48
28.6
MONOCYTES_49
28.4
MONOCYTES_50
28.4
MONOCYTES_51
28.3
MONOCYTES_52
28.2
MONOCYTES_53
27.9
MONOCYTES_54
27.8
MONOCYTES_55
27.6
MONOCYTES_56
27.5
MONOCYTES_57
27.5
MONOCYTES_58
27.5
MONOCYTES_59
27.3
MONOCYTES_60
27.3
MONOCYTES_61
27.1
MONOCYTES_62
27.0
MONOCYTES_63
26.9
MONOCYTES_64
26.8
MONOCYTES_65
26.3
MONOCYTES_66
26.3
MONOCYTES_67
26.3
MONOCYTES_68
26.2
MONOCYTES_69
26.2
MONOCYTES_70
26.1
MONOCYTES_71
26.1
MONOCYTES_72
26.0
MONOCYTES_73
25.7
MONOCYTES_74
25.6
MONOCYTES_75
25.4
MONOCYTES_76
25.4
MONOCYTES_77
25.3
MONOCYTES_78
25.2
MONOCYTES_79
24.9
MONOCYTES_80
24.8
MONOCYTES_81
24.7
MONOCYTES_82
24.7
MONOCYTES_83
24.7
MONOCYTES_84
24.5
MONOCYTES_85
24.4
MONOCYTES_86
24.4
MONOCYTES_87
23.1
MONOCYTES_88
21.9
MONOCYTES_89
21.6
MONOCYTES_90
20.9
MONOCYTES_91
16.6
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Non-classical monocyte TPM: 42.2
Samples: 90
Max TPM: 68.6
Min TPM: 24.5
M2_1
68.6
M2_2
59.9
M2_3
57.4
M2_4
54.8
M2_5
54.7
M2_6
54.5
M2_7
52.1
M2_8
51.8
M2_9
51.6
M2_10
51.1
M2_11
51.0
M2_12
49.2
M2_13
48.9
M2_14
47.6
M2_15
47.3
M2_16
47.2
M2_17
47.1
M2_18
46.8
M2_19
46.4
M2_20
46.3
M2_21
46.0
M2_22
45.7
M2_23
45.6
M2_24
45.1
M2_25
44.8
M2_26
44.8
M2_27
44.3
M2_28
44.1
M2_29
44.0
M2_30
44.0
M2_31
43.7
M2_32
43.6
M2_33
43.6
M2_34
43.5
M2_35
43.4
M2_36
43.4
M2_37
43.2
M2_38
43.1
M2_39
42.9
M2_40
42.0
M2_41
41.7
M2_42
41.7
M2_43
41.2
M2_44
41.1
M2_45
41.1
M2_46
41.0
M2_47
41.0
M2_48
40.8
M2_49
40.8
M2_50
40.7
M2_51
40.5
M2_52
40.2
M2_53
40.2
M2_54
40.2
M2_55
40.2
M2_56
39.9
M2_57
39.9
M2_58
39.8
M2_59
39.6
M2_60
39.4
M2_61
39.3
M2_62
39.2
M2_63
39.0
M2_64
39.0
M2_65
39.0
M2_66
38.9
M2_67
38.5
M2_68
38.3
M2_69
38.0
M2_70
37.3
M2_71
37.3
M2_72
37.0
M2_73
36.8
M2_74
36.6
M2_75
36.5
M2_76
36.5
M2_77
36.3
M2_78
35.8
M2_79
35.7
M2_80
35.7
M2_81
35.5
M2_82
34.6
M2_83
34.3
M2_84
34.2
M2_85
33.8
M2_86
33.6
M2_87
32.3
M2_88
32.1
M2_89
26.9
M2_90
24.5
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