A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
40.2
nTPM
Monaco:
171.8
nTPM
Schmiedel:
25.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
40.2
HPA sample
nTPM
Memory B-cell nTPM: 37.9
Samples: 6
Max nTPM: 65.0
Min nTPM: 26.7
P10809_1017
29.2
P10809_1025
40.9
P10809_1044
65.0
P10809_1063
26.7
P10809_1092
35.6
P10809_1105
30.3
Naive B-cell nTPM: 40.2
Samples: 6
Max nTPM: 85.3
Min nTPM: 25.5
P10809_1011
26.2
P10809_1029
32.4
P10809_1048
85.3
P10809_1067
25.5
P10809_1091
31.4
P10809_1104
40.6
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
171.8
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 58.9
Samples: 4
Max nTPM: 90.4
Min nTPM: 28.8
RHH5310_R3677
90.4
RHH5218_R3590
84.8
RHH5247_R3619
28.8
RHH5276_R3648
31.6
Naive B-cell nTPM: 59.3
Samples: 4
Max nTPM: 104.6
Min nTPM: 21.3
RHH5308_R3675
66.4
RHH5216_R3588
104.6
RHH5245_R3617
21.3
RHH5274_R3646
44.7
Non-switched memory B-cell nTPM: 54.8
Samples: 4
Max nTPM: 94.6
Min nTPM: 26.7
RHH5309_R3676
56.8
RHH5217_R3589
94.6
RHH5246_R3618
41.0
RHH5275_R3647
26.7
Plasmablast nTPM: 171.9
Samples: 4
Max nTPM: 294.7
Min nTPM: 109.8
RHH5312_R3679
159.7
RHH5220_R3592
294.7
RHH5249_R3621
109.8
RHH5278_R3650
123.2
Switched memory B-cell nTPM: 65.8
Samples: 4
Max nTPM: 122.4
Min nTPM: 27.5
RHH5311_R3678
77.9
RHH5219_R3591
122.4
RHH5248_R3620
27.5
RHH5277_R3649
35.5
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
25.0
Schmiedel sample id
TPM
Naive B-cell TPM: 25.0
Samples: 91
Max TPM: 57.4
Min TPM: 5.4
B_CELL_NAIVE_1
57.4
B_CELL_NAIVE_2
42.5
B_CELL_NAIVE_3
39.1
B_CELL_NAIVE_4
37.1
B_CELL_NAIVE_5
36.9
B_CELL_NAIVE_6
36.3
B_CELL_NAIVE_7
36.1
B_CELL_NAIVE_8
36.0
B_CELL_NAIVE_9
35.7
B_CELL_NAIVE_10
35.4
B_CELL_NAIVE_11
34.4
B_CELL_NAIVE_12
34.0
B_CELL_NAIVE_13
34.0
B_CELL_NAIVE_14
33.1
B_CELL_NAIVE_15
32.8
B_CELL_NAIVE_16
32.4
B_CELL_NAIVE_17
32.0
B_CELL_NAIVE_18
31.8
B_CELL_NAIVE_19
31.6
B_CELL_NAIVE_20
31.3
B_CELL_NAIVE_21
31.1
B_CELL_NAIVE_22
30.7
B_CELL_NAIVE_23
30.7
B_CELL_NAIVE_24
29.8
B_CELL_NAIVE_25
29.2
B_CELL_NAIVE_26
28.6
B_CELL_NAIVE_27
28.6
B_CELL_NAIVE_28
28.5
B_CELL_NAIVE_29
28.5
B_CELL_NAIVE_30
28.4
B_CELL_NAIVE_31
28.2
B_CELL_NAIVE_32
28.1
B_CELL_NAIVE_33
27.9
B_CELL_NAIVE_34
27.8
B_CELL_NAIVE_35
27.8
B_CELL_NAIVE_36
27.7
B_CELL_NAIVE_37
27.6
B_CELL_NAIVE_38
27.6
B_CELL_NAIVE_39
27.5
B_CELL_NAIVE_40
27.4
B_CELL_NAIVE_41
27.1
B_CELL_NAIVE_42
26.9
B_CELL_NAIVE_43
26.9
B_CELL_NAIVE_44
26.9
B_CELL_NAIVE_45
25.8
B_CELL_NAIVE_46
25.8
B_CELL_NAIVE_47
25.7
B_CELL_NAIVE_48
25.0
B_CELL_NAIVE_49
24.8
B_CELL_NAIVE_50
24.3
B_CELL_NAIVE_51
24.1
B_CELL_NAIVE_52
24.0
B_CELL_NAIVE_53
23.8
B_CELL_NAIVE_54
23.6
B_CELL_NAIVE_55
23.3
B_CELL_NAIVE_56
23.2
B_CELL_NAIVE_57
23.1
B_CELL_NAIVE_58
23.1
B_CELL_NAIVE_59
22.5
B_CELL_NAIVE_60
21.9
B_CELL_NAIVE_61
21.9
B_CELL_NAIVE_62
21.8
B_CELL_NAIVE_63
21.6
B_CELL_NAIVE_64
21.2
B_CELL_NAIVE_65
20.8
B_CELL_NAIVE_66
20.5
B_CELL_NAIVE_67
20.3
B_CELL_NAIVE_68
20.2
B_CELL_NAIVE_69
20.2
B_CELL_NAIVE_70
20.0
B_CELL_NAIVE_71
18.6
B_CELL_NAIVE_72
18.6
B_CELL_NAIVE_73
17.9
B_CELL_NAIVE_74
17.1
B_CELL_NAIVE_75
16.4
B_CELL_NAIVE_76
15.6
B_CELL_NAIVE_77
15.3
B_CELL_NAIVE_78
15.2
B_CELL_NAIVE_79
15.0
B_CELL_NAIVE_80
14.6
B_CELL_NAIVE_81
14.5
B_CELL_NAIVE_82
14.1
B_CELL_NAIVE_83
13.8
B_CELL_NAIVE_84
13.0
B_CELL_NAIVE_85
12.8
B_CELL_NAIVE_86
11.9
B_CELL_NAIVE_87
11.5
B_CELL_NAIVE_88
9.2
B_CELL_NAIVE_89
7.6
B_CELL_NAIVE_90
7.5
B_CELL_NAIVE_91
5.4
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