A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
127.9
nTPM
Monaco:
165.6
nTPM
Schmiedel:
66.3
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
127.9
HPA sample
nTPM
Classical monocyte nTPM: 102.9
Samples: 6
Max nTPM: 124.3
Min nTPM: 70.3
P10809_1003
107.3
P10809_1020
93.2
P10809_1039
118.8
P10809_1058
70.3
P10809_1080
103.2
P10809_1107
124.3
Intermediate monocyte nTPM: 127.9
Samples: 6
Max nTPM: 167.0
Min nTPM: 87.2
P10809_1004
111.2
P10809_1023
136.9
P10809_1042
157.2
P10809_1061
87.2
P10809_1081
107.7
P10809_1108
167.0
Non-classical monocyte nTPM: 122.5
Samples: 5
Max nTPM: 159.2
Min nTPM: 86.1
P10809_1005
113.2
P10809_1053
138.1
P10809_1072
115.7
P10809_1082
86.1
P10809_1109
159.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
165.6
Monaco sample
nTPM
Classical monocyte nTPM: 160.2
Samples: 4
Max nTPM: 230.6
Min nTPM: 105.9
RHH5313_R3680
133.9
RHH5221_R3593
230.6
RHH5250_R3622
105.9
RHH5279_R3651
170.3
Intermediate monocyte nTPM: 165.6
Samples: 4
Max nTPM: 207.3
Min nTPM: 69.8
RHH5314_R3681
181.6
RHH5222_R3594
207.3
RHH5251_R3623
69.8
RHH5280_R3652
203.5
Non-classical monocyte nTPM: 113.0
Samples: 4
Max nTPM: 140.0
Min nTPM: 65.3
RHH5315_R3682
114.4
RHH5223_R3595
132.2
RHH5252_R3624
65.3
RHH5281_R3653
140.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
66.3
Schmiedel sample id
TPM
Classical monocyte TPM: 65.7
Samples: 91
Max TPM: 152.1
Min TPM: 30.2
MONOCYTES_1
152.1
MONOCYTES_2
117.6
MONOCYTES_3
112.5
MONOCYTES_4
98.7
MONOCYTES_5
95.4
MONOCYTES_6
94.4
MONOCYTES_7
92.5
MONOCYTES_8
92.0
MONOCYTES_9
90.8
MONOCYTES_10
89.4
MONOCYTES_11
89.2
MONOCYTES_12
85.4
MONOCYTES_13
84.8
MONOCYTES_14
83.2
MONOCYTES_15
83.1
MONOCYTES_16
82.7
MONOCYTES_17
81.2
MONOCYTES_18
80.7
MONOCYTES_19
78.8
MONOCYTES_20
78.5
MONOCYTES_21
75.4
MONOCYTES_22
75.2
MONOCYTES_23
73.9
MONOCYTES_24
73.8
MONOCYTES_25
73.6
MONOCYTES_26
73.2
MONOCYTES_27
73.1
MONOCYTES_28
72.9
MONOCYTES_29
71.4
MONOCYTES_30
70.5
MONOCYTES_31
70.1
MONOCYTES_32
68.5
MONOCYTES_33
68.4
MONOCYTES_34
68.1
MONOCYTES_35
68.0
MONOCYTES_36
68.0
MONOCYTES_37
67.9
MONOCYTES_38
67.9
MONOCYTES_39
67.0
MONOCYTES_40
65.5
MONOCYTES_41
65.1
MONOCYTES_42
64.1
MONOCYTES_43
63.5
MONOCYTES_44
63.0
MONOCYTES_45
62.6
MONOCYTES_46
62.4
MONOCYTES_47
62.2
MONOCYTES_48
62.1
MONOCYTES_49
61.8
MONOCYTES_50
61.6
MONOCYTES_51
60.6
MONOCYTES_52
59.4
MONOCYTES_53
58.7
MONOCYTES_54
58.6
MONOCYTES_55
58.4
MONOCYTES_56
57.8
MONOCYTES_57
57.3
MONOCYTES_58
57.2
MONOCYTES_59
56.7
MONOCYTES_60
56.6
MONOCYTES_61
55.8
MONOCYTES_62
55.7
MONOCYTES_63
55.6
MONOCYTES_64
55.3
MONOCYTES_65
54.9
MONOCYTES_66
54.8
MONOCYTES_67
54.5
MONOCYTES_68
53.9
MONOCYTES_69
53.9
MONOCYTES_70
53.4
MONOCYTES_71
51.8
MONOCYTES_72
51.7
MONOCYTES_73
51.7
MONOCYTES_74
51.0
MONOCYTES_75
50.5
MONOCYTES_76
49.4
MONOCYTES_77
49.0
MONOCYTES_78
48.6
MONOCYTES_79
48.2
MONOCYTES_80
47.7
MONOCYTES_81
47.1
MONOCYTES_82
45.7
MONOCYTES_83
45.4
MONOCYTES_84
45.0
MONOCYTES_85
43.0
MONOCYTES_86
42.3
MONOCYTES_87
41.3
MONOCYTES_88
38.6
MONOCYTES_89
36.1
MONOCYTES_90
35.4
MONOCYTES_91
30.2
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Non-classical monocyte TPM: 66.4
Samples: 90
Max TPM: 184.5
Min TPM: 18.8
M2_1
184.5
M2_2
150.6
M2_3
111.2
M2_4
109.7
M2_5
104.8
M2_6
102.4
M2_7
99.4
M2_8
95.1
M2_9
93.1
M2_10
93.0
M2_11
91.3
M2_12
88.6
M2_13
87.3
M2_14
86.0
M2_15
84.4
M2_16
84.3
M2_17
84.1
M2_18
83.3
M2_19
82.2
M2_20
80.7
M2_21
79.5
M2_22
79.3
M2_23
78.9
M2_24
77.2
M2_25
76.3
M2_26
76.0
M2_27
74.3
M2_28
73.9
M2_29
73.7
M2_30
72.6
M2_31
71.8
M2_32
71.6
M2_33
71.0
M2_34
70.2
M2_35
70.0
M2_36
69.8
M2_37
69.1
M2_38
68.9
M2_39
68.3
M2_40
68.0
M2_41
67.4
M2_42
67.3
M2_43
67.0
M2_44
65.2
M2_45
64.9
M2_46
64.7
M2_47
64.2
M2_48
63.6
M2_49
63.5
M2_50
62.1
M2_51
60.8
M2_52
60.6
M2_53
60.4
M2_54
58.3
M2_55
58.1
M2_56
58.0
M2_57
57.9
M2_58
57.6
M2_59
57.3
M2_60
57.1
M2_61
56.1
M2_62
53.3
M2_63
53.2
M2_64
52.7
M2_65
52.6
M2_66
52.3
M2_67
52.1
M2_68
52.0
M2_69
49.5
M2_70
47.8
M2_71
47.8
M2_72
47.6
M2_73
46.9
M2_74
46.8
M2_75
46.3
M2_76
45.0
M2_77
44.0
M2_78
43.8
M2_79
41.9
M2_80
40.9
M2_81
40.8
M2_82
39.7
M2_83
34.1
M2_84
32.8
M2_85
32.2
M2_86
29.8
M2_87
29.5
M2_88
27.7
M2_89
21.4
M2_90
18.8
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