A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
8.3
nTPM
Monaco:
17.2
nTPM
Schmiedel:
42.0
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
8.3
HPA sample
nTPM
Memory B-cell nTPM: 8.3
Samples: 6
Max nTPM: 26.0
Min nTPM: 2.0
P10809_1017
3.8
P10809_1025
5.4
P10809_1044
26.0
P10809_1063
5.6
P10809_1092
6.9
P10809_1105
2.0
Naive B-cell nTPM: 4.3
Samples: 6
Max nTPM: 6.5
Min nTPM: 2.5
P10809_1011
2.9
P10809_1029
6.5
P10809_1048
4.2
P10809_1067
2.5
P10809_1091
5.2
P10809_1104
4.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.2
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 7.6
Samples: 4
Max nTPM: 11.4
Min nTPM: 3.3
RHH5310_R3677
3.3
RHH5218_R3590
6.8
RHH5247_R3619
8.9
RHH5276_R3648
11.4
Naive B-cell nTPM: 12.5
Samples: 4
Max nTPM: 17.9
Min nTPM: 7.2
RHH5308_R3675
7.2
RHH5216_R3588
10.7
RHH5245_R3617
17.9
RHH5274_R3646
14.0
Non-switched memory B-cell nTPM: 17.2
Samples: 4
Max nTPM: 26.3
Min nTPM: 9.7
RHH5309_R3676
14.3
RHH5217_R3589
9.7
RHH5246_R3618
18.3
RHH5275_R3647
26.3
Plasmablast nTPM: 3.4
Samples: 4
Max nTPM: 8.8
Min nTPM: 1.5
RHH5312_R3679
1.5
RHH5220_R3592
1.6
RHH5249_R3621
1.5
RHH5278_R3650
8.8
Switched memory B-cell nTPM: 8.8
Samples: 4
Max nTPM: 15.4
Min nTPM: 3.6
RHH5311_R3678
3.6
RHH5219_R3591
8.1
RHH5248_R3620
8.0
RHH5277_R3649
15.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
42.0
Schmiedel sample id
TPM
Naive B-cell TPM: 42.0
Samples: 91
Max TPM: 70.1
Min TPM: 29.4
B_CELL_NAIVE_1
70.1
B_CELL_NAIVE_2
69.3
B_CELL_NAIVE_3
68.0
B_CELL_NAIVE_4
67.6
B_CELL_NAIVE_5
63.7
B_CELL_NAIVE_6
60.3
B_CELL_NAIVE_7
57.9
B_CELL_NAIVE_8
55.9
B_CELL_NAIVE_9
55.0
B_CELL_NAIVE_10
54.2
B_CELL_NAIVE_11
53.6
B_CELL_NAIVE_12
53.4
B_CELL_NAIVE_13
51.9
B_CELL_NAIVE_14
51.8
B_CELL_NAIVE_15
50.7
B_CELL_NAIVE_16
50.3
B_CELL_NAIVE_17
49.9
B_CELL_NAIVE_18
49.7
B_CELL_NAIVE_19
49.2
B_CELL_NAIVE_20
48.9
B_CELL_NAIVE_21
48.1
B_CELL_NAIVE_22
48.0
B_CELL_NAIVE_23
47.6
B_CELL_NAIVE_24
47.5
B_CELL_NAIVE_25
46.5
B_CELL_NAIVE_26
45.9
B_CELL_NAIVE_27
45.7
B_CELL_NAIVE_28
45.0
B_CELL_NAIVE_29
44.3
B_CELL_NAIVE_30
44.0
B_CELL_NAIVE_31
43.8
B_CELL_NAIVE_32
43.6
B_CELL_NAIVE_33
43.3
B_CELL_NAIVE_34
42.7
B_CELL_NAIVE_35
42.5
B_CELL_NAIVE_36
42.3
B_CELL_NAIVE_37
41.7
B_CELL_NAIVE_38
41.1
B_CELL_NAIVE_39
41.0
B_CELL_NAIVE_40
40.7
B_CELL_NAIVE_41
40.5
B_CELL_NAIVE_42
40.1
B_CELL_NAIVE_43
40.0
B_CELL_NAIVE_44
40.0
B_CELL_NAIVE_45
39.9
B_CELL_NAIVE_46
39.6
B_CELL_NAIVE_47
39.3
B_CELL_NAIVE_48
38.9
B_CELL_NAIVE_49
38.6
B_CELL_NAIVE_50
38.4
B_CELL_NAIVE_51
38.4
B_CELL_NAIVE_52
38.3
B_CELL_NAIVE_53
37.7
B_CELL_NAIVE_54
37.3
B_CELL_NAIVE_55
37.2
B_CELL_NAIVE_56
37.2
B_CELL_NAIVE_57
37.1
B_CELL_NAIVE_58
37.1
B_CELL_NAIVE_59
37.1
B_CELL_NAIVE_60
36.8
B_CELL_NAIVE_61
36.2
B_CELL_NAIVE_62
36.0
B_CELL_NAIVE_63
35.9
B_CELL_NAIVE_64
35.8
B_CELL_NAIVE_65
35.5
B_CELL_NAIVE_66
35.3
B_CELL_NAIVE_67
35.3
B_CELL_NAIVE_68
35.0
B_CELL_NAIVE_69
34.6
B_CELL_NAIVE_70
34.5
B_CELL_NAIVE_71
34.1
B_CELL_NAIVE_72
34.1
B_CELL_NAIVE_73
34.0
B_CELL_NAIVE_74
33.9
B_CELL_NAIVE_75
33.9
B_CELL_NAIVE_76
33.7
B_CELL_NAIVE_77
33.7
B_CELL_NAIVE_78
33.2
B_CELL_NAIVE_79
33.2
B_CELL_NAIVE_80
33.1
B_CELL_NAIVE_81
32.8
B_CELL_NAIVE_82
32.7
B_CELL_NAIVE_83
32.6
B_CELL_NAIVE_84
32.3
B_CELL_NAIVE_85
31.6
B_CELL_NAIVE_86
31.2
B_CELL_NAIVE_87
30.8
B_CELL_NAIVE_88
30.7
B_CELL_NAIVE_89
30.0
B_CELL_NAIVE_90
29.5
B_CELL_NAIVE_91
29.4
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The Human Protein Atlas project is funded
