A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.7
nTPM
Monaco:
13.2
nTPM
Schmiedel:
28.6
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.7
HPA sample
nTPM
Classical monocyte nTPM: 3.4
Samples: 6
Max nTPM: 5.9
Min nTPM: 2.1
P10809_1003
2.8
P10809_1020
3.2
P10809_1039
5.9
P10809_1058
3.5
P10809_1080
2.1
P10809_1107
3.2
Intermediate monocyte nTPM: 5.4
Samples: 6
Max nTPM: 6.3
Min nTPM: 4.2
P10809_1004
5.8
P10809_1023
5.0
P10809_1042
6.3
P10809_1061
6.0
P10809_1081
5.3
P10809_1108
4.2
Non-classical monocyte nTPM: 5.7
Samples: 5
Max nTPM: 8.3
Min nTPM: 2.2
P10809_1005
6.6
P10809_1053
6.8
P10809_1072
8.3
P10809_1082
4.4
P10809_1109
2.2
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
13.2
Monaco sample
nTPM
Classical monocyte nTPM: 9.1
Samples: 4
Max nTPM: 12.7
Min nTPM: 4.9
RHH5313_R3680
6.1
RHH5221_R3593
4.9
RHH5250_R3622
12.7
RHH5279_R3651
12.5
Intermediate monocyte nTPM: 10.7
Samples: 4
Max nTPM: 13.0
Min nTPM: 7.8
RHH5314_R3681
10.8
RHH5222_R3594
7.8
RHH5251_R3623
13.0
RHH5280_R3652
11.2
Non-classical monocyte nTPM: 13.1
Samples: 4
Max nTPM: 18.4
Min nTPM: 9.8
RHH5315_R3682
9.8
RHH5223_R3595
18.4
RHH5252_R3624
12.1
RHH5281_R3653
12.3
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
28.6
Schmiedel sample id
TPM
Classical monocyte TPM: 15.6
Samples: 91
Max TPM: 22.3
Min TPM: 10.9
MONOCYTES_1
22.3
MONOCYTES_2
21.2
MONOCYTES_3
20.5
MONOCYTES_4
20.4
MONOCYTES_5
20.3
MONOCYTES_6
19.9
MONOCYTES_7
19.7
MONOCYTES_8
19.2
MONOCYTES_9
19.0
MONOCYTES_10
18.8
MONOCYTES_11
18.7
MONOCYTES_12
18.6
MONOCYTES_13
18.5
MONOCYTES_14
18.4
MONOCYTES_15
18.3
MONOCYTES_16
18.2
MONOCYTES_17
17.5
MONOCYTES_18
17.3
MONOCYTES_19
17.1
MONOCYTES_20
17.0
MONOCYTES_21
16.9
MONOCYTES_22
16.9
MONOCYTES_23
16.8
MONOCYTES_24
16.8
MONOCYTES_25
16.6
MONOCYTES_26
16.5
MONOCYTES_27
16.5
MONOCYTES_28
16.4
MONOCYTES_29
16.3
MONOCYTES_30
16.1
MONOCYTES_31
16.1
MONOCYTES_32
15.9
MONOCYTES_33
15.8
MONOCYTES_34
15.8
MONOCYTES_35
15.8
MONOCYTES_36
15.7
MONOCYTES_37
15.7
MONOCYTES_38
15.6
MONOCYTES_39
15.5
MONOCYTES_40
15.5
MONOCYTES_41
15.5
MONOCYTES_42
15.5
MONOCYTES_43
15.5
MONOCYTES_44
15.5
MONOCYTES_45
15.4
MONOCYTES_46
15.2
MONOCYTES_47
15.2
MONOCYTES_48
15.1
MONOCYTES_49
15.1
MONOCYTES_50
15.1
MONOCYTES_51
15.1
MONOCYTES_52
15.0
MONOCYTES_53
14.9
MONOCYTES_54
14.9
MONOCYTES_55
14.7
MONOCYTES_56
14.6
MONOCYTES_57
14.6
MONOCYTES_58
14.5
MONOCYTES_59
14.5
MONOCYTES_60
14.4
MONOCYTES_61
14.4
MONOCYTES_62
14.4
MONOCYTES_63
14.4
MONOCYTES_64
14.3
MONOCYTES_65
14.2
MONOCYTES_66
14.2
MONOCYTES_67
14.1
MONOCYTES_68
14.0
MONOCYTES_69
14.0
MONOCYTES_70
14.0
MONOCYTES_71
13.9
MONOCYTES_72
13.9
MONOCYTES_73
13.9
MONOCYTES_74
13.8
MONOCYTES_75
13.8
MONOCYTES_76
13.8
MONOCYTES_77
13.8
MONOCYTES_78
13.7
MONOCYTES_79
13.7
MONOCYTES_80
13.6
MONOCYTES_81
13.3
MONOCYTES_82
13.1
MONOCYTES_83
12.9
MONOCYTES_84
12.8
MONOCYTES_85
12.4
MONOCYTES_86
12.1
MONOCYTES_87
12.1
MONOCYTES_88
12.1
MONOCYTES_89
11.8
MONOCYTES_90
11.4
MONOCYTES_91
10.9
Show allShow less
Non-classical monocyte TPM: 28.6
Samples: 90
Max TPM: 44.1
Min TPM: 19.6
M2_1
44.1
M2_2
39.3
M2_3
37.6
M2_4
37.2
M2_5
35.4
M2_6
33.5
M2_7
33.4
M2_8
33.1
M2_9
32.6
M2_10
32.5
M2_11
32.4
M2_12
32.0
M2_13
31.9
M2_14
31.9
M2_15
31.8
M2_16
31.5
M2_17
31.3
M2_18
31.2
M2_19
31.0
M2_20
31.0
M2_21
31.0
M2_22
30.9
M2_23
30.9
M2_24
30.9
M2_25
30.8
M2_26
30.6
M2_27
30.5
M2_28
30.4
M2_29
30.3
M2_30
30.2
M2_31
30.0
M2_32
29.9
M2_33
29.8
M2_34
29.6
M2_35
29.4
M2_36
29.3
M2_37
29.3
M2_38
29.2
M2_39
29.1
M2_40
29.0
M2_41
29.0
M2_42
28.8
M2_43
28.5
M2_44
28.4
M2_45
28.3
M2_46
28.3
M2_47
28.0
M2_48
27.9
M2_49
27.8
M2_50
27.7
M2_51
27.7
M2_52
27.6
M2_53
27.3
M2_54
27.2
M2_55
27.2
M2_56
27.1
M2_57
26.9
M2_58
26.8
M2_59
26.6
M2_60
26.6
M2_61
26.4
M2_62
26.4
M2_63
26.3
M2_64
26.3
M2_65
26.2
M2_66
26.1
M2_67
26.0
M2_68
25.8
M2_69
25.8
M2_70
25.7
M2_71
25.6
M2_72
25.6
M2_73
25.6
M2_74
25.5
M2_75
25.1
M2_76
24.9
M2_77
24.8
M2_78
24.7
M2_79
24.5
M2_80
24.2
M2_81
24.0
M2_82
24.0
M2_83
23.5
M2_84
23.4
M2_85
23.3
M2_86
23.3
M2_87
23.3
M2_88
23.2
M2_89
22.8
M2_90
19.6
Show allShow less
We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Human Protein Atlas project is funded
