A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
17.5
nTPM
Monaco:
94.9
nTPM
Schmiedel:
102.8
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
17.5
HPA sample
nTPM
Memory B-cell nTPM: 17.5
Samples: 6
Max nTPM: 22.6
Min nTPM: 12.4
P10809_1017
16.2
P10809_1025
13.9
P10809_1044
22.6
P10809_1063
21.4
P10809_1092
18.3
P10809_1105
12.4
Naive B-cell nTPM: 12.9
Samples: 6
Max nTPM: 17.6
Min nTPM: 9.1
P10809_1011
11.7
P10809_1029
9.1
P10809_1048
9.5
P10809_1067
15.6
P10809_1091
17.6
P10809_1104
13.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
94.9
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 91.5
Samples: 4
Max nTPM: 115.9
Min nTPM: 68.0
RHH5310_R3677
68.0
RHH5218_R3590
77.2
RHH5247_R3619
115.9
RHH5276_R3648
105.0
Naive B-cell nTPM: 94.9
Samples: 4
Max nTPM: 114.9
Min nTPM: 69.6
RHH5308_R3675
69.6
RHH5216_R3588
114.9
RHH5245_R3617
98.1
RHH5274_R3646
96.9
Non-switched memory B-cell nTPM: 93.7
Samples: 4
Max nTPM: 102.8
Min nTPM: 76.5
RHH5309_R3676
76.5
RHH5217_R3589
102.8
RHH5246_R3618
98.5
RHH5275_R3647
96.9
Plasmablast nTPM: 49.0
Samples: 4
Max nTPM: 61.7
Min nTPM: 39.9
RHH5312_R3679
61.7
RHH5220_R3592
47.2
RHH5249_R3621
39.9
RHH5278_R3650
47.0
Switched memory B-cell nTPM: 76.3
Samples: 4
Max nTPM: 85.5
Min nTPM: 70.0
RHH5311_R3678
70.0
RHH5219_R3591
77.2
RHH5248_R3620
85.5
RHH5277_R3649
72.4
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
102.8
Schmiedel sample id
TPM
Naive B-cell TPM: 102.8
Samples: 91
Max TPM: 146.8
Min TPM: 75.8
B_CELL_NAIVE_1
146.8
B_CELL_NAIVE_2
143.2
B_CELL_NAIVE_3
140.3
B_CELL_NAIVE_4
133.0
B_CELL_NAIVE_5
129.7
B_CELL_NAIVE_6
128.7
B_CELL_NAIVE_7
127.0
B_CELL_NAIVE_8
125.3
B_CELL_NAIVE_9
123.9
B_CELL_NAIVE_10
121.8
B_CELL_NAIVE_11
121.0
B_CELL_NAIVE_12
119.2
B_CELL_NAIVE_13
118.8
B_CELL_NAIVE_14
117.9
B_CELL_NAIVE_15
117.9
B_CELL_NAIVE_16
116.4
B_CELL_NAIVE_17
116.4
B_CELL_NAIVE_18
116.0
B_CELL_NAIVE_19
115.1
B_CELL_NAIVE_20
114.2
B_CELL_NAIVE_21
114.2
B_CELL_NAIVE_22
114.2
B_CELL_NAIVE_23
113.5
B_CELL_NAIVE_24
113.0
B_CELL_NAIVE_25
111.8
B_CELL_NAIVE_26
110.6
B_CELL_NAIVE_27
110.0
B_CELL_NAIVE_28
109.3
B_CELL_NAIVE_29
108.8
B_CELL_NAIVE_30
108.8
B_CELL_NAIVE_31
108.6
B_CELL_NAIVE_32
108.4
B_CELL_NAIVE_33
108.1
B_CELL_NAIVE_34
105.2
B_CELL_NAIVE_35
105.2
B_CELL_NAIVE_36
104.6
B_CELL_NAIVE_37
104.5
B_CELL_NAIVE_38
104.3
B_CELL_NAIVE_39
104.1
B_CELL_NAIVE_40
103.9
B_CELL_NAIVE_41
103.9
B_CELL_NAIVE_42
103.3
B_CELL_NAIVE_43
102.2
B_CELL_NAIVE_44
101.8
B_CELL_NAIVE_45
101.8
B_CELL_NAIVE_46
101.5
B_CELL_NAIVE_47
99.8
B_CELL_NAIVE_48
99.8
B_CELL_NAIVE_49
99.4
B_CELL_NAIVE_50
99.3
B_CELL_NAIVE_51
99.0
B_CELL_NAIVE_52
98.5
B_CELL_NAIVE_53
97.9
B_CELL_NAIVE_54
96.7
B_CELL_NAIVE_55
96.0
B_CELL_NAIVE_56
96.0
B_CELL_NAIVE_57
95.4
B_CELL_NAIVE_58
95.2
B_CELL_NAIVE_59
95.2
B_CELL_NAIVE_60
94.8
B_CELL_NAIVE_61
94.6
B_CELL_NAIVE_62
94.5
B_CELL_NAIVE_63
94.5
B_CELL_NAIVE_64
94.0
B_CELL_NAIVE_65
93.2
B_CELL_NAIVE_66
93.1
B_CELL_NAIVE_67
93.1
B_CELL_NAIVE_68
92.2
B_CELL_NAIVE_69
92.1
B_CELL_NAIVE_70
91.8
B_CELL_NAIVE_71
91.0
B_CELL_NAIVE_72
89.9
B_CELL_NAIVE_73
89.5
B_CELL_NAIVE_74
89.1
B_CELL_NAIVE_75
88.2
B_CELL_NAIVE_76
87.8
B_CELL_NAIVE_77
87.0
B_CELL_NAIVE_78
86.6
B_CELL_NAIVE_79
86.2
B_CELL_NAIVE_80
86.1
B_CELL_NAIVE_81
85.9
B_CELL_NAIVE_82
85.3
B_CELL_NAIVE_83
85.2
B_CELL_NAIVE_84
84.7
B_CELL_NAIVE_85
84.1
B_CELL_NAIVE_86
81.4
B_CELL_NAIVE_87
80.2
B_CELL_NAIVE_88
79.9
B_CELL_NAIVE_89
78.9
B_CELL_NAIVE_90
76.6
B_CELL_NAIVE_91
75.8
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The Human Protein Atlas project is funded
