A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
22.6
nTPM
Monaco:
96.2
nTPM
Schmiedel:
86.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
22.6
HPA sample
nTPM
Classical monocyte nTPM: 13.4
Samples: 6
Max nTPM: 15.3
Min nTPM: 11.0
P10809_1003
12.6
P10809_1020
11.4
P10809_1039
14.7
P10809_1058
15.3
P10809_1080
15.2
P10809_1107
11.0
Intermediate monocyte nTPM: 16.9
Samples: 6
Max nTPM: 31.6
Min nTPM: 8.0
P10809_1004
14.1
P10809_1023
12.2
P10809_1042
20.8
P10809_1061
31.6
P10809_1081
14.7
P10809_1108
8.0
Non-classical monocyte nTPM: 22.6
Samples: 5
Max nTPM: 58.3
Min nTPM: 10.1
P10809_1005
14.9
P10809_1053
16.4
P10809_1072
58.3
P10809_1082
13.1
P10809_1109
10.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
96.2
Monaco sample
nTPM
Classical monocyte nTPM: 90.4
Samples: 4
Max nTPM: 98.6
Min nTPM: 73.6
RHH5313_R3680
97.1
RHH5221_R3593
98.6
RHH5250_R3622
92.5
RHH5279_R3651
73.6
Intermediate monocyte nTPM: 93.9
Samples: 4
Max nTPM: 112.2
Min nTPM: 80.2
RHH5314_R3681
80.2
RHH5222_R3594
112.2
RHH5251_R3623
87.1
RHH5280_R3652
95.9
Non-classical monocyte nTPM: 96.2
Samples: 4
Max nTPM: 119.5
Min nTPM: 80.6
RHH5315_R3682
87.6
RHH5223_R3595
119.5
RHH5252_R3624
80.6
RHH5281_R3653
97.1
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
86.8
Schmiedel sample id
TPM
Classical monocyte TPM: 74.9
Samples: 91
Max TPM: 103.5
Min TPM: 52.9
MONOCYTES_1
103.5
MONOCYTES_2
95.3
MONOCYTES_3
93.9
MONOCYTES_4
93.3
MONOCYTES_5
93.1
MONOCYTES_6
91.7
MONOCYTES_7
90.2
MONOCYTES_8
90.0
MONOCYTES_9
89.6
MONOCYTES_10
89.2
MONOCYTES_11
88.6
MONOCYTES_12
88.0
MONOCYTES_13
85.1
MONOCYTES_14
85.0
MONOCYTES_15
84.7
MONOCYTES_16
84.1
MONOCYTES_17
83.0
MONOCYTES_18
82.8
MONOCYTES_19
82.3
MONOCYTES_20
82.2
MONOCYTES_21
82.0
MONOCYTES_22
82.0
MONOCYTES_23
81.9
MONOCYTES_24
81.8
MONOCYTES_25
81.3
MONOCYTES_26
80.8
MONOCYTES_27
80.5
MONOCYTES_28
78.8
MONOCYTES_29
78.3
MONOCYTES_30
77.6
MONOCYTES_31
77.1
MONOCYTES_32
76.8
MONOCYTES_33
76.7
MONOCYTES_34
76.1
MONOCYTES_35
76.1
MONOCYTES_36
75.8
MONOCYTES_37
75.6
MONOCYTES_38
75.5
MONOCYTES_39
75.3
MONOCYTES_40
75.2
MONOCYTES_41
74.9
MONOCYTES_42
74.9
MONOCYTES_43
74.1
MONOCYTES_44
73.9
MONOCYTES_45
73.9
MONOCYTES_46
73.4
MONOCYTES_47
73.3
MONOCYTES_48
72.7
MONOCYTES_49
72.4
MONOCYTES_50
72.2
MONOCYTES_51
72.2
MONOCYTES_52
71.9
MONOCYTES_53
71.8
MONOCYTES_54
71.8
MONOCYTES_55
71.2
MONOCYTES_56
71.2
MONOCYTES_57
71.1
MONOCYTES_58
70.9
MONOCYTES_59
70.9
MONOCYTES_60
70.8
MONOCYTES_61
70.5
MONOCYTES_62
70.4
MONOCYTES_63
70.1
MONOCYTES_64
70.0
MONOCYTES_65
69.8
MONOCYTES_66
69.8
MONOCYTES_67
69.7
MONOCYTES_68
69.3
MONOCYTES_69
69.1
MONOCYTES_70
68.7
MONOCYTES_71
68.7
MONOCYTES_72
68.2
MONOCYTES_73
67.6
MONOCYTES_74
66.9
MONOCYTES_75
66.5
MONOCYTES_76
66.5
MONOCYTES_77
66.5
MONOCYTES_78
66.2
MONOCYTES_79
65.6
MONOCYTES_80
65.4
MONOCYTES_81
64.9
MONOCYTES_82
64.3
MONOCYTES_83
63.4
MONOCYTES_84
63.3
MONOCYTES_85
62.1
MONOCYTES_86
61.8
MONOCYTES_87
61.4
MONOCYTES_88
57.4
MONOCYTES_89
57.1
MONOCYTES_90
56.0
MONOCYTES_91
52.9
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Non-classical monocyte TPM: 86.8
Samples: 90
Max TPM: 115.8
Min TPM: 63.0
M2_1
115.8
M2_2
115.1
M2_3
113.8
M2_4
112.9
M2_5
111.6
M2_6
110.7
M2_7
106.7
M2_8
106.6
M2_9
105.8
M2_10
105.5
M2_11
101.1
M2_12
100.7
M2_13
99.4
M2_14
97.3
M2_15
97.1
M2_16
96.3
M2_17
96.1
M2_18
95.8
M2_19
93.9
M2_20
93.7
M2_21
93.6
M2_22
92.9
M2_23
92.8
M2_24
92.7
M2_25
92.7
M2_26
92.3
M2_27
91.8
M2_28
91.7
M2_29
90.7
M2_30
90.2
M2_31
89.4
M2_32
88.6
M2_33
88.6
M2_34
88.3
M2_35
87.9
M2_36
87.4
M2_37
87.2
M2_38
87.1
M2_39
87.0
M2_40
86.8
M2_41
86.7
M2_42
86.5
M2_43
86.1
M2_44
85.9
M2_45
85.8
M2_46
85.1
M2_47
85.1
M2_48
85.1
M2_49
85.0
M2_50
84.9
M2_51
82.3
M2_52
82.1
M2_53
81.8
M2_54
81.3
M2_55
81.2
M2_56
80.9
M2_57
80.3
M2_58
80.3
M2_59
80.1
M2_60
80.0
M2_61
79.9
M2_62
79.7
M2_63
79.7
M2_64
79.6
M2_65
79.5
M2_66
79.5
M2_67
79.4
M2_68
78.9
M2_69
78.9
M2_70
78.6
M2_71
78.3
M2_72
78.1
M2_73
78.0
M2_74
77.8
M2_75
77.6
M2_76
77.4
M2_77
76.9
M2_78
75.9
M2_79
75.8
M2_80
75.6
M2_81
74.9
M2_82
74.2
M2_83
74.0
M2_84
73.7
M2_85
72.4
M2_86
71.6
M2_87
70.2
M2_88
68.8
M2_89
65.0
M2_90
63.0
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